Jatropha Genome Database

JcCB0443791.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0443791.10 + phase: 0 /partial
         (1437 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas emb...   337   2e-92

>gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004251,
           mRNA sequence
          Length = 525

 Score =  337 bits (170), Expect = 2e-92
 Identities = 421/501 (84%), Gaps = 7/501 (1%)
 Strand = Plus / Plus

                                                                       
Query: 415 ctttttagcgctaaaagagttcaatcattccagtcct-ttagagaagaagaagtgggttt 473
           |||||||| |||||||||| |||||| || || |||| |||||||||||||||||||| |
Sbjct: 1   ctttttagtgctaaaagagctcaatcgtttcaatcctgttagagaagaagaagtgggtct 60

                                                                       
Query: 474 tttaatcgattcgattttaaaatcttcttcagcctcttcttctcctgttgatctaagtga 533
           ||| || |||||||||||||||||||||||    |||||||||||||| ||||| |||||
Sbjct: 61  tttcatagattcgattttaaaatcttcttct---tcttcttctcctgtggatcttagtga 117

                                                                       
Query: 534 aaagactttgtctcttactgcaaatgttacctgtagagtagcttttggggaaactttt-c 592
           ||| | | |||||||||||||||||||||| |||||||||||||||||| | | |||| |
Sbjct: 118 aaaaattatgtctcttactgcaaatgttacttgtagagtagcttttgggaatagttttgc 177

                                                                       
Query: 593 aagagagaggacttgcccatgaaagatttcaagaagtgattcatgaagggttggctatgt 652
           || | |||||| || |||| ||||| ||||||||||||||||||||||  || || | ||
Sbjct: 178 aaca-agaggatttacccaggaaaggtttcaagaagtgattcatgaagctttagccaagt 236

                                                                       
Query: 653 tggggagtttttctgcagctgannnnnnnccttatgtgggttggattgttgataggctta 712
           | ||| ||||||||||| ||||       ||||||||||||||||||||||||||| |||
Sbjct: 237 tagggggtttttctgcatctgacttttttccttatgtgggttggattgttgatagggtta 296

                                                                       
Query: 713 caggtctccatgaaagactagaaagaaactttcaagaatttgatgagttataccaagaga 772
           |||||||||||  || ||| ||||||| |||||||||| ||||||| ||  ||||  |||
Sbjct: 297 caggtctccattcaaaactggaaagaagctttcaagaacttgatgaattccaccagaaga 356

                                                                       
Query: 773 ttattgatgatcatatccaaaagggaaaatcagatcctggacatgaagatatcgttgatg 832
           ||||||| |||||||||||||| ||||||    | | ||||||| ||||||| || ||||
Sbjct: 357 ttattgaggatcatatccaaaacggaaaagagaagcatggacatcaagatattgtcgatg 416

                                                                       
Query: 833 ttttgttggatatggagaaagatcaaactgaatctggtggaattcaattctctcaaaatc 892
           | | || |||| |||||| | |||||||||||||||  ||||||||||||||| ||| ||
Sbjct: 417 tatagtcggatttggagagatatcaaactgaatctgaaggaattcaattctctaaaagtc 476

                                
Query: 893 a-tatcaaagcaattctcatg 912
           |  |||||||||||| |||||
Sbjct: 477 acaatcaaagcaattatcatg 497