Jatropha Genome Database

JcCB0432331.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0432331.10 + phase: 0 /partial
         (330 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518068|gb|FM893443.1|FM893443 FM893443 Jatropha curcas emb...   381   e-106

>gi|268518068|gb|FM893443.1|FM893443 FM893443 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_004231,
           mRNA sequence
          Length = 535

 Score =  381 bits (192), Expect = e-106
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                       
Query: 139 gaaacaactaagcctgtagcagttggctttggcatatcaaaacctgagcatgtgaaacag 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gaaacaactaagcctgtagcagttggctttggcatatcaaaacctgagcatgtgaaacag 281

                                                                       
Query: 199 gtggcggggtggggtgctgatggtgtcattgtaggtagtgcaattgtgaaggtgttgggt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtggcggggtggggtgctgatggtgtcattgtaggtagtgcaattgtgaaggtgttgggt 221

                                                                       
Query: 259 gatgcaaaatctccagaggaagggttgaaggaactagaaaatttaaccaaatctttgaag 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gatgcaaaatctccagaggaagggttgaaggaactagaaaatttaaccaaatctttgaag 161

                       
Query: 319 tctgcgcttctt 330
           ||||||||||||
Sbjct: 160 tctgcgcttctt 149



 Score =  222 bits (112), Expect = 2e-58
 Identities = 115/116 (99%)
 Strand = Plus / Minus

                                                                       
Query: 24  ggtacttctcaccacaccaactactccaaaaggaagaatgaaagccattgtgaaagcatc 83
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggtacttctcaccacacctactactccaaaaggaagaatgaaagccattgtgaaagcatc 438

                                                                   
Query: 84  agagggatttgtgtatcttgtaagctcagttggtgttactggtgcccgtgcatctg 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agagggatttgtgtatcttgtaagctcagttggtgttactggtgcccgtgcatctg 382