Jatropha Genome Database
- JcCB0429581.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0429581.10 - phase: 0 /pseudo
(1233 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|262091373|gb|GT228800.1|GT228800 JC365 Jatropha seeds from fr... 208 1e-53
gi|268520870|gb|FM889628.1|FM889628 FM889628 Jatropha curcas emb... 170 2e-42
gi|268519035|gb|FM887502.1|FM887502 FM887502 Jatropha curcas emb... 92 2e-18
>gi|262091373|gb|GT228800.1|GT228800 JC365 Jatropha seeds from fruits
at three stages of maturation Jatropha curcas cDNA clone
PL07SE.D11.scf 5', mRNA sequence
Length = 135
Score = 208 bits (105), Expect = 1e-53
Identities = 115/117 (98%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 1117 tctaagggccctcgaactgaaatgctaccggaaagttaatcgaagttcaggcaatggtcc 1176
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 tctaagggccctcgaactgaaatgct-ccggaaagttaatcgaagttcaggcaatggtcc 59
Query: 1177 aaaatatcgtaggagaagtactaatgaaatttgtgatggaaaagctgcctcttgtcc 1233
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aaaatatcgtaagagaagtactaatgaaatttgtgatggaaaagctgcctcttgtcc 116
>gi|268520870|gb|FM889628.1|FM889628 FM889628 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003333,
mRNA sequence
Length = 547
Score = 170 bits (86), Expect = 2e-42
Identities = 227/274 (82%)
Strand = Plus / Plus
Query: 224 ccactaggaacttccgtccagatagtatgttgggtgaaggtggatttggttctgtgttca 283
||||||| |||||| | ||||||||| | |||| |||||||| ||||| || || ||||
Sbjct: 136 ccactagaaacttcagaccagatagtgtactgggagaaggtggttttggatcagttttca 195
Query: 284 aaggatggattgatgagcaaacactaacagctgccaagcctggaatgggcacggttattg 343
|||| |||||||||||||| | || ||||| ||||||||| |||| ||| ||||
Sbjct: 196 aagggtggattgatgagcattctctttcagctaccaagcctgattctggcatggtgattg 255
Query: 344 ctgtgaaaaggcttaaccaagatggtttccagggtcaccaggaatggctgaccgaaatca 403
||||||| |||||||| ||||| || |||||| ||||| ||||||||||| | || ||||
Sbjct: 256 ctgtgaagaggcttaatcaagaagggttccagtgtcacaaggaatggctggcagagatca 315
Query: 404 actaccttgggcagctttatcatccaaatcttgtgaaattgattggtttctgcttagagg 463
|||| |||||||| | | ||||| |||||||| || |||||||||| |||||| ||||
Sbjct: 316 actatcttgggcaattggagcatcctaatcttgttaagttgattggttactgctttgagg 375
Query: 464 atgaccatcggcttttggtatatgagtttatgcc 497
|||||||||| |||||||| ||||||||||||||
Sbjct: 376 atgaccatcgccttttggtctatgagtttatgcc 409
>gi|268519035|gb|FM887502.1|FM887502 FM887502 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000719,
mRNA sequence
Length = 634
Score = 91.7 bits (46), Expect = 2e-18
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 424 catccaaatcttgtgaaattgattggtttctgcttagaggatgaccatcggcttttggta 483
||||| ||||| |||||| ||||||||| |||||| |||||||||||||| ||| ||||
Sbjct: 597 catccgaatctagtgaaactgattggttactgcttggaggatgaccatcgacttctggtc 538
Query: 484 tatgagtttatgccaaagggtagcttggagaatc 517
||||||||| |||| || || |||||||||||||
Sbjct: 537 tatgagtttgtgcccaatggcagcttggagaatc 504
Score = 54.0 bits (27), Expect = 4e-07
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 550 ctctcttggaatctcagaatgaagattgctcttgatgctgccaagggtctcgcatttctt 609
||||||||||||||| | ||||| |||| |||| |||||| ||| |||| |||||||||
Sbjct: 389 ctctcttggaatctccgtatgaaagttgcccttggtgctgctaagtgtctggcatttctt 330
Query: 610 cat 612
|||
Sbjct: 329 cat 327