Jatropha Genome Database

JcCB0402071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0402071.10 - phase: 0 /partial
         (965 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523916|gb|FM890602.1|FM890602 FM890602 Jatropha curcas emb...   143   4e-34

>gi|268523916|gb|FM890602.1|FM890602 FM890602 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000496,
           mRNA sequence
          Length = 480

 Score =  143 bits (72), Expect = 4e-34
 Identities = 222/272 (81%)
 Strand = Plus / Minus

                                                                       
Query: 691 aagaataaggaaacaggatgggaaaccccgattcatgtggatgcagcaagtggtgggttt 750
           |||||| |||| || || ||||| ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 371 aagaatgaggagactggttgggacacccccattcacgtggatgcagccagtggagggttt 312

                                                                       
Query: 751 attgcaccatttttgtatccagaacttgaatgggattttagattaccattagttaagagt 810
           ||||| |||||  | || ||||| ||||||||||||||| |  | ||||| || ||||| 
Sbjct: 311 attgctccattcctttacccagatcttgaatgggattttcgtctgccattggtgaagagc 252

                                                                       
Query: 811 attaatgttagtggtcacaaatatgggcttgtatatgctggtattggttgggtcatttgg 870
           |||||||| || |||||||| ||||| || || ||||||||| |||||||||   |||||
Sbjct: 251 attaatgtcagcggtcacaagtatggcctcgtttatgctggtgttggttgggctgtttgg 192

                                                                       
Query: 871 agaagcaaagaggacttgcctgaagagctcattttccatattaattaccttggagctgat 930
           || |  || || |||||||| || ||||| || || || ||||| ||||||||  |||||
Sbjct: 191 aggactaaggaagacttgccagaggagcttatctttcacattaactaccttggctctgat 132

                                           
Query: 931 caacccaccttcaccctcaatttctccaaagg 962
           |||||||| ||||| ||||| ||||| |||||
Sbjct: 131 caacccactttcacactcaacttctcaaaagg 100