Jatropha Genome Database
- JcCB0396891.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0396891.10 + phase: 1 /partial
(593 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268524483|gb|FM895163.1|FM895163 FM895163 Jatropha curcas emb... 912 0.0
gi|262090979|gb|GT229337.1|GT229337 JC902 Jatropha seeds from fr... 686 0.0
>gi|268524483|gb|FM895163.1|FM895163 FM895163 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001943,
mRNA sequence
Length = 658
Score = 912 bits (460), Expect = 0.0
Identities = 559/592 (94%)
Strand = Plus / Plus
Query: 1 cttttgcattcgataacagtcctcttcaagatttttgtgtggcagatataactggtcaag 60
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 33 cttttgcattcgataatagtcctcttcaagatttttgtgtggcagatacaactggtcaag 92
Query: 61 tacgagtgaatggttttccatgcaaggacccaaaggaagttcaagcagatgatttctttt 120
|| |||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||| |
Sbjct: 93 taagagtgaatggctttccatgcaaggacccgaagcaagttcaagcaaatgatttcttct 152
Query: 121 ttgctgggcttcatttacctaccaacacatcaaacccatttggtttagggtctaacatac 180
|| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 153 ttactgggcttcatttacctaccaacacatcgaacccatctggtttagggtctaacataa 212
Query: 181 ttacagcatctcagttaccaggtttaaacactcttgggatctctttggctcgtgtagatt 240
| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 213 tcacagcgactcgattaccaggtctaaacactcttgggatctctttggctcgtgtagatt 272
Query: 241 ttgcaccattgggtgttagctctccacacatacatccaagggctactgaagttgtgacca 300
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcgcaccatcgggtgttagctctccacacatacatccaagggctactgaagttgtgacca 332
Query: 301 ttctggagggtaccctagaaatggggtttgtgacttctcttccagacaatcgtctgatct 360
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 333 ttttggagggtaccctagaaatgggatttgtgacttctcttccagacaaccgtctgatct 392
Query: 361 caaaggtccttaataagggtgatgtgttcgtcgtccctcctggtcttatccattatgcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 caaaggtccttaataagggtgatgtgttcgtcgtccctcctggtcttatccattatgcaa 452
Query: 421 gaaaccctggaaagagtaatactgctggtattgttgcttttagtagccaaagcccagggt 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 453 gaaaccctggaaagagtaatactgcttgtattgttgcttttagtagccaaagcccagggt 512
Query: 481 tccttctcatcccccaggcagtgtttggatcaaaccataatatttctagtgatattcttg 540
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 513 tccttctcatcccccaggcagtgtttgggtcaaaccctaatatttctagtgatattcttg 572
Query: 541 ccaagtcttttcaggttgacgagaatgtcatttctcaaattcgagccaagtt 592
||||||||||||| ||||||||||| | |||||||| ||| |||||||||
Sbjct: 573 ccaagtcttttcaagttgacgagaacattatttctcagattaaagccaagtt 624
>gi|262090979|gb|GT229337.1|GT229337 JC902 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL22SE.E11.scf 5', mRNA sequence
Length = 535
Score = 686 bits (346), Expect = 0.0
Identities = 425/452 (94%)
Strand = Plus / Minus
Query: 141 accaacacatcaaacccatttggtttagggtctaacatacttacagcatctcagttacca 200
||||||||||| ||||||| ||||||||||||||||||| | ||||| ||| ||||||
Sbjct: 534 accaacacatcgaacccatctggtttagggtctaacataatcacagcgactcgattacca 475
Query: 201 ggtttaaacactcttgggatctctttggctcgtgtagattttgcaccattgggtgttagc 260
||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 474 ggtctaaacactcgtgggatctctttggctcgtgtagatttcgcaccatcgggtgttagc 415
Query: 261 tctccacacatacatccaagggctactgaagttgtgaccattctggagggtaccctagaa 320
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 414 tctccacacatacatccaagggctactgaagttgtgaccattttggagggtaccctagaa 355
Query: 321 atggggtttgtgacttctcttccagacaatcgtctgatctcaaaggtccttaataagggt 380
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 354 atgggatttgtgacttctcttccagacaaccgtctgatctcaaaggtccttaataagggt 295
Query: 381 gatgtgttcgtcgtccctcctggtcttatccattatgcaagaaaccctggaaagagtaat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gatgtgttcgtcgtccctcctggtcttatccattatgcaagaaaccctggaaagagtaat 235
Query: 441 actgctggtattgttgcttttagtagccaaagcccagggttccttctcatcccccaggca 500
|||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 234 actgcttgtattgttgcttttagtagccaaagcncagggttccttctcatcccncaggca 175
Query: 501 gtgtttggatcaaaccataatatttctagtgatattcttgccaagtcttttcaggttgac 560
|||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 174 gtgtttgggtcaaaccctaatatttctagtgatattcttgccaagtcttttcaagttgac 115
Query: 561 gagaatgtcatttctcaaattcgagccaagtt 592
||||| | |||||||| ||| |||||||||
Sbjct: 114 gagaacattatttctcagattaaagccaagtt 83