Jatropha Genome Database
- JcCB0384321.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0384321.10 - phase: 2 /partial
(529 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268523830|gb|FM890516.1|FM890516 FM890516 Jatropha curcas emb... 636 0.0
gi|268524356|gb|FM895036.1|FM895036 FM895036 Jatropha curcas emb... 389 e-108
gi|268526403|gb|FM895257.1|FM895257 FM895257 Jatropha curcas emb... 262 4e-70
gi|268523472|gb|FM893795.1|FM893795 FM893795 Jatropha curcas emb... 220 1e-57
gi|237680754|gb|GO246966.1|GO246966 JcrME_RL0510 Expressed seque... 218 5e-57
gi|268525189|gb|FM895831.1|FM895831 FM895831 Jatropha curcas emb... 190 1e-48
gi|268516838|gb|FM892390.1|FM892390 FM892390 Jatropha curcas emb... 147 1e-35
gi|268523293|gb|FM894059.1|FM894059 FM894059 Jatropha curcas emb... 82 7e-16
>gi|268523830|gb|FM890516.1|FM890516 FM890516 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000187,
mRNA sequence
Length = 461
Score = 636 bits (321), Expect = 0.0
Identities = 321/321 (100%)
Strand = Plus / Plus
Query: 1 gttcaaagggtatgttttcaaaatcatgggagggtgtgacaaacaaggatttcccatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gttcaaagggtatgttttcaaaatcatgggagggtgtgacaaacaaggatttcccatgaa 200
Query: 61 gcagggagttctcactcctggtcgtgtccgtttgttgctacacagaggcaccccatgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagggagttctcactcctggtcgtgtccgtttgttgctacacagaggcaccccatgttt 260
Query: 121 tcgtggatatggaagacggaatggtgagcgcaggagaaagtctgttcgcgggtgtattgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgtggatatggaagacggaatggtgagcgcaggagaaagtctgttcgcgggtgtattgt 320
Query: 181 tagtcaggacctttctgttttgaacttggttatagtgaagaagggtgaaaatgatttgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcaggacctttctgttttgaacttggttatagtgaagaagggtgaaaatgatttgcc 380
Query: 241 cggtttgactgacactgaaaaacctaggatgagaggtccaaagagggcatccaagatccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggtttgactgacactgaaaaacctaggatgagaggtccaaagagggcatccaagatccg 440
Query: 301 gaagctttttaacctttccaa 321
|||||||||||||||||||||
Sbjct: 441 gaagctttttaacctttccaa 461
>gi|268524356|gb|FM895036.1|FM895036 FM895036 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001378,
mRNA sequence
Length = 510
Score = 389 bits (196), Expect = e-108
Identities = 199/200 (99%)
Strand = Plus / Minus
Query: 182 agtcaggacctttctgttttgaacttggttatagtgaagaagggtgaaaatgatttgccc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 510 agtcaggacctttctgttttgaacttggttatagtgaagaagggtgaaaatgagttgccc 451
Query: 242 ggtttgactgacactgaaaaacctaggatgagaggtccaaagagggcatccaagatccgg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggtttgactgacactgaaaaacctaggatgagaggtccaaagagggcatccaagatccgg 391
Query: 302 aagctttttaacctttccaaggaagatgatgtccgcaaatatgtcaacacataccgtaga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagctttttaacctttccaaggaagatgatgtccgcaaatatgtcaacacataccgtaga 331
Query: 362 acctttacaacaaaatctgg 381
||||||||||||||||||||
Sbjct: 330 acctttacaacaaaatctgg 311
>gi|268526403|gb|FM895257.1|FM895257 FM895257 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002053,
mRNA sequence
Length = 562
Score = 262 bits (132), Expect = 4e-70
Identities = 321/384 (83%)
Strand = Plus / Minus
Query: 1 gttcaaagggtatgttttcaaaatcatgggagggtgtgacaaacaaggatttcccatgaa 60
||||||||| ||||| || || || |||||||| |||||||||||||| ||||| |||||
Sbjct: 463 gttcaaaggttatgtatttaagattatgggaggctgtgacaaacaaggttttccaatgaa 404
Query: 61 gcagggagttctcactcctggtcgtgtccgtttgttgctacacagaggcaccccatgttt 120
|||||||||||| ||||| || ||||| || | ||||| ||| |||| ||||| || ||
Sbjct: 403 gcagggagttctaactccaggccgtgttcgacttttgcttcaccgaggtaccccttgctt 344
Query: 121 tcgtggatatggaagacggaatggtgagcgcaggagaaagtctgttcgcgggtgtattgt 180
||||||||||| || || ||||| || || || || ||||||||||| || || |||||
Sbjct: 343 ccgtggatatgggaggcgtaatggagaacgaagaaggaagtctgttcgtggatgcattgt 284
Query: 181 tagtcaggacctttctgttttgaacttggttatagtgaagaagggtgaaaatgatttgcc 240
|||||||| || || ||||||||||||||||| || ||||| |||||| | ||| ||||
Sbjct: 283 gagtcaggatctctcagttttgaacttggttattgttaagaaaggtgaacaggatctgcc 224
Query: 241 cggtttgactgacactgaaaaacctaggatgagaggtccaaagagggcatccaagatccg 300
|| |||| |||||||| || ||||| ||||||||||| ||||||||||| |||||| |
Sbjct: 223 aggactgacagacactgagaagcctagaatgagaggtcctaagagggcatcaaagatcag 164
Query: 301 gaagctttttaacctttccaaggaagatgatgtccgcaaatatgtcaacacataccgtag 360
||| || |||||||| |||||||| ||||||||||| || ||||||||||| ||||| |
Sbjct: 163 gaaactgtttaacctctccaaggaggatgatgtccggaagtatgtcaacacttaccgccg 104
Query: 361 aacctttacaacaaaatctggtaa 384
||| |||||||| |||||||||||
Sbjct: 103 aacatttacaaccaaatctggtaa 80
>gi|268523472|gb|FM893795.1|FM893795 FM893795 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004721,
mRNA sequence
Length = 547
Score = 220 bits (111), Expect = 1e-57
Identities = 270/323 (83%)
Strand = Plus / Plus
Query: 11 tatgttttcaaaatcatgggagggtgtgacaaacaaggatttcccatgaagcagggagtt 70
||||||||||| || |||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 204 tatgttttcaagattatgggaggttgtgacaagcaagggtttcccatgaagcagggagtg 263
Query: 71 ctcactcctggtcgtgtccgtttgttgctacacagaggcaccccatgttttcgtggatat 130
| |||||||| |||||||| | ||||| |||||||| ||||| || ||||| || |||
Sbjct: 264 ttgactcctggccgtgtccgactcttgcttcacagaggaaccccttgctttcgcggttat 323
Query: 131 ggaagacggaatggtgagcgcaggagaaagtctgttcgcgggtgtattgttagtcaggac 190
||||| || ||||| || |||||||| |||||||| ||||| || ||||| || || |||
Sbjct: 324 ggaaggcgaaatggagaacgcaggaggaagtctgtccgcggatgcattgtcagccaagac 383
Query: 191 ctttctgttttgaacttggttatagtgaagaagggtgaaaatgatttgcccggtttgact 250
|||||||||||||||||||| || ||||||||||| || | ||| |||| || ||||
Sbjct: 384 ctttctgttttgaacttggtaattgtgaagaagggagagcaagatctgcctggactgaca 443
Query: 251 gacactgaaaaacctaggatgagaggtccaaagagggcatccaagatccggaagcttttt 310
|||||||| ||||| || |||||||| || |||||||| || |||||||| ||||| |||
Sbjct: 444 gacactgagaaacccagaatgagaggacctaagagggcttcaaagatccgcaagctcttt 503
Query: 311 aacctttccaaggaagatgatgt 333
|| || ||||| || ||||||||
Sbjct: 504 aatctctccaaagaggatgatgt 526
>gi|237680754|gb|GO246966.1|GO246966 JcrME_RL0510 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 726
Score = 218 bits (110), Expect = 5e-57
Identities = 308/374 (82%)
Strand = Plus / Plus
Query: 11 tatgttttcaaaatcatgggagggtgtgacaaacaaggatttcccatgaagcagggagtt 70
||||||||||| || |||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 234 tatgttttcaagattatgggaggttgtgacaagcaagggtttcccatgaagcagggagtg 293
Query: 71 ctcactcctggtcgtgtccgtttgttgctacacagaggcaccccatgttttcgtggatat 130
| |||||||| |||||||| | ||||| |||||||| ||||| || ||||| || |||
Sbjct: 294 ttgactcctggccgtgtccgactcttgcttcacagaggaaccccttgctttcgcggttat 353
Query: 131 ggaagacggaatggtgagcgcaggagaaagtctgttcgcgggtgtattgttagtcaggac 190
||||| || ||||| || |||||||| |||||||| ||||| || ||||| || || |||
Sbjct: 354 ggaaggcgaaatggagaacgcaggaggaagtctgtccgcggatgcattgtcagccaagac 413
Query: 191 ctttctgttttgaacttggttatagtgaagaagggtgaaaatgatttgcccggtttgact 250
|||||||||||||||||||| || ||||||||||| || | ||| |||| || ||||
Sbjct: 414 ctttctgttttgaacttggtaattgtgaagaagggagagcaagatctgcctggactgaca 473
Query: 251 gacactgaaaaacctaggatgagaggtccaaagagggcatccaagatccggaagcttttt 310
|||||||| ||||| || |||||||| || |||||||| || |||||||| ||||| |||
Sbjct: 474 gacactgagaaaccaagaatgagaggacctaagagggcttcaaagatccgcaagctcttt 533
Query: 311 aacctttccaaggaagatgatgtccgcaaatatgtcaacacataccgtagaacctttaca 370
|| || || || || |||||||| || || || || || || ||||| ||| | || |||
Sbjct: 534 aatctctcaaaagaggatgatgttcggaagtacgtaaatacttaccgcagatcattcaca 593
Query: 371 acaaaatctggtaa 384
|| |||||||||||
Sbjct: 594 actaaatctggtaa 607
>gi|268525189|gb|FM895831.1|FM895831 FM895831 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002827,
mRNA sequence
Length = 393
Score = 190 bits (96), Expect = 1e-48
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 6 aagggtatgttttcaaaatcatgggagggtgtgacaaacaaggatttcccatgaagcagg 65
|||||||||||||||| || |||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 143 aagggtatgttttcaagattatgggaggttgtgacaagcaagggtttcccatgaagcagg 202
Query: 66 gagttctcactcctggtcgtgtccgtttgttgctacacagaggcaccccatgttttcgtg 125
|||| | |||||||| |||||||| | ||||| |||||||| ||||| || ||||| |
Sbjct: 203 gagtgttgactcctggccgtgtccgactcttgcttcacagaggaaccccttgctttcgcg 262
Query: 126 gatatggaagacggaatggtgagcgcaggagaaagtctgttcgcgggtgtattgttagtc 185
| |||||||| || ||||| || |||||||| |||||||| ||||| || ||||| || |
Sbjct: 263 gttatggaaggcgaaatggagaacgcaggaggaagtctgtccgcggatgcattgtcagcc 322
Query: 186 aggacctttctgttttgaacttggttatagtgaagaaggg 225
| ||||||||||||||||||||||| || |||||||||||
Sbjct: 323 aagacctttctgttttgaacttggtaattgtgaagaaggg 362
>gi|268516838|gb|FM892390.1|FM892390 FM892390 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002934,
mRNA sequence
Length = 505
Score = 147 bits (74), Expect = 1e-35
Identities = 236/290 (81%)
Strand = Plus / Plus
Query: 95 ttgctacacagaggcaccccatgttttcgtggatatggaagacggaatggtgagcgcagg 154
||||| |||||||| ||||| || ||||| || |||||||| || ||||| || ||||||
Sbjct: 12 ttgcttcacagaggaaccccttgctttcgcggttatggaaggcgaaatggagaacgcagg 71
Query: 155 agaaagtctgttcgcgggtgtattgttagtcaggacctttctgttttgaacttggttata 214
|| |||||||| ||||| || ||||| || || ||||||||||||||||||||||| ||
Sbjct: 72 aggaagtctgtccgcggatgcattgtcagccaagacctttctgttttgaacttggtaatt 131
Query: 215 gtgaagaagggtgaaaatgatttgcccggtttgactgacactgaaaaacctaggatgaga 274
||||||||||| || | ||| |||| || |||| |||||||| ||||| || ||||||
Sbjct: 132 gtgaagaagggagagcaagatctgcctggactgacagacactgagaaaccaagaatgaga 191
Query: 275 ggtccaaagagggcatccaagatccggaagctttttaacctttccaaggaagatgatgtc 334
|| || |||||||| || |||||||| ||||| ||||| || || || || ||||||||
Sbjct: 192 ggacctaagagggcttcaaagatccgcaagctctttaatctctcaaaagaggatgatgtt 251
Query: 335 cgcaaatatgtcaacacataccgtagaacctttacaacaaaatctggtaa 384
|| || || || || || ||||| ||| | || ||||| |||||||||||
Sbjct: 252 cggaagtacgtaaatacttaccgcagatcattcacaactaaatctggtaa 301
>gi|268523293|gb|FM894059.1|FM894059 FM894059 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_005031,
mRNA sequence
Length = 581
Score = 81.8 bits (41), Expect = 7e-16
Identities = 159/197 (80%), Gaps = 1/197 (0%)
Strand = Plus / Minus
Query: 188 gacctttctgttttgaacttggttatagtgaagaagggtgaaaatgatttgcccggtttg 247
||||||||| ||||||||||||| || ||||||||||| || | ||| |||| || ||
Sbjct: 558 gacctttct-ttttgaacttggtaattgtgaagaagggagagcaagatctgcctggactg 500
Query: 248 actgacactgaaaaacctaggatgagaggtccaaagagggcatccaagatccggaagctt 307
|| |||||||| ||||| || |||||||| || |||||||| || |||||||| |||||
Sbjct: 499 acagacactgagaaaccaagaatgagaggacctaagagggcttcaaagatccgcaagctc 440
Query: 308 tttaacctttccaaggaagatgatgtccgcaaatatgtcaacacataccgtagaaccttt 367
||||| || || || || |||||||| || || || || || || ||||| ||| | ||
Sbjct: 439 tttaatctctcaaaagaggatgatgttcggaagtacgtaaatacttaccgcagatcattc 380
Query: 368 acaacaaaatctggtaa 384
||||| |||||||||||
Sbjct: 379 acaactaaatctggtaa 363