Jatropha Genome Database
- JcCB0383651.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0383651.10 + phase: 0 /partial
(205 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237681002|gb|GO247638.1|GO247638 JcrME_RL1182 Expressed seque... 345 1e-95
gi|268524026|gb|FM890712.1|FM890712 FM890712 Jatropha curcas emb... 321 2e-88
gi|268518089|gb|FM893464.1|FM893464 FM893464 Jatropha curcas emb... 240 5e-64
gi|268519814|gb|FM888281.1|FM888281 FM888281 Jatropha curcas emb... 133 8e-32
>gi|237681002|gb|GO247638.1|GO247638 JcrME_RL1182 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 676
Score = 345 bits (174), Expect = 1e-95
Identities = 181/182 (99%), Gaps = 1/182 (0%)
Strand = Plus / Plus
Query: 5 agtttcaccaataccaggttgttggaagagggttgcccactgagaatgatgagcatccaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 agtttcaccaataccaggttgttggaagagggttgcccactgagaatgatgagcatccaa 166
Query: 65 aaatttatcggatgaagctgtgggccactaatgaggttagggccaagtccaagttctggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aaatttatcggatgaagctgtgggccactaatgaggttagggccaagtccaagttctggt 226
Query: 125 acttcttgaggaagctgaaaaaggt-aagaagagcaatggccaagtacttgctattaacg 183
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 227 acttcttgaggaagctgaaaaaggtcaagaagagcaatggccaagtacttgctattaacg 286
Query: 184 ag 185
||
Sbjct: 287 ag 288
>gi|268524026|gb|FM890712.1|FM890712 FM890712 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000657,
mRNA sequence
Length = 378
Score = 321 bits (162), Expect = 2e-88
Identities = 179/182 (98%), Gaps = 2/182 (1%)
Strand = Plus / Plus
Query: 5 agtttcaccaataccaggttgttggaagagggttgcccactgagaatgatgagcatccaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 agtttcaccaataccaggttgttggaagagggttgcccactgagaatgatgagcatccaa 108
Query: 65 aaatttatcggatgaagctgtgggccactaatgaggttagggccaagtccaagttctggt 124
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 109 aaatt-atcggatgaagctgtgggccactaatgaggttagggccaagtccaagtactggt 167
Query: 125 acttcttgaggaagctgaaaaaggt-aagaagagcaatggccaagtacttgctattaacg 183
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 168 acttcttgaggaagctgaaaaaggtcaagaagagcaatggccaagtacttgctattaacg 227
Query: 184 ag 185
||
Sbjct: 228 ag 229
>gi|268518089|gb|FM893464.1|FM893464 FM893464 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_004284,
mRNA sequence
Length = 222
Score = 240 bits (121), Expect = 5e-64
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 5 agtttcaccaataccaggttgttggaagagggttgcccactgagaatgatgagcatccaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 agtttcaccaataccaggttgttggaagagggttgcccactgagaatgatgagcatccaa 161
Query: 65 aaatttatcggatgaagctgtgggccactaatgaggttagggccaagtccaagttctggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aaatttatcggatgaagctgtgggccactaatgaggttagggccaagtccaagttctggt 221
Query: 125 a 125
|
Sbjct: 222 a 222
>gi|268519814|gb|FM888281.1|FM888281 FM888281 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001663,
mRNA sequence
Length = 509
Score = 133 bits (67), Expect = 8e-32
Identities = 88/91 (96%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 96 tgaggttagggccaagtccaagttctggtacttcttgaggaagctgaaaaaggt-aagaa 154
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 22 tgaggttagggcca-gtc-aagttctggtacttcttgaggaagctgaaaaaggtcaagaa 79
Query: 155 gagcaatggccaagtacttgctattaacgag 185
|||||||||||||||||||||||||||||||
Sbjct: 80 gagcaatggccaagtacttgctattaacgag 110