Jatropha Genome Database

JcCB0374601.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0374601.10 - phase: 1 /pseudo/partial
         (830 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516717|gb|FM890424.1|FM890424 FM890424 Jatropha curcas emb...   208   7e-54
gi|268520584|gb|FM889342.1|FM889342 FM889342 Jatropha curcas emb...   208   7e-54
gi|268525073|gb|FM895715.1|FM895715 FM895715 Jatropha curcas emb...    92   1e-18

>gi|268516717|gb|FM890424.1|FM890424 FM890424 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004279,
           mRNA sequence
          Length = 447

 Score =  208 bits (105), Expect = 7e-54
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                       
Query: 639 tataaaactttgaaggaaaaaatgagggagtacaacaagaaggaagccaaattttatggc 698
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tataaaactttgaaggaaaaaatgagggagtacaacaagaaggaagccaaattttatggc 388

                                                        
Query: 699 aacatgtttgccaagatgaataagctggggccgcttgactctaat 743
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aacatgtttgccaagatgaataagctggggccgcttgactctaat 343


>gi|268520584|gb|FM889342.1|FM889342 FM889342 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002984,
           mRNA sequence
          Length = 333

 Score =  208 bits (105), Expect = 7e-54
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                       
Query: 639 tataaaactttgaaggaaaaaatgagggagtacaacaagaaggaagccaaattttatggc 698
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tataaaactttgaaggaaaaaatgagggagtacaacaagaaggaagccaaattttatggc 274

                                                        
Query: 699 aacatgtttgccaagatgaataagctggggccgcttgactctaat 743
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aacatgtttgccaagatgaataagctggggccgcttgactctaat 229


>gi|268525073|gb|FM895715.1|FM895715 FM895715 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002685,
           mRNA sequence
          Length = 513

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 89/102 (87%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                       
Query: 603 gagattgaccctgacaatagggatgtcaagctcgagtataaaactttgaaggaaaaaatg 662
           |||||||| ||||||||| ||||||| ||||| ||||| |||| ||||||||||||| | 
Sbjct: 477 gagattgatcctgacaatcgggatgtgaagctggagtacaaaattttgaaggaaaaagta 418

                                                     
Query: 663 a-gggagtacaacaagaaggaagccaaattttatggcaacat 703
           | ||||||||||||||||||| ||  |||||||| |||||||
Sbjct: 417 aggggagtacaacaagaaggatgcacaattttatagcaacat 376