Jatropha Genome Database

JcCB0374481.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0374481.10 - phase: 0 /partial
         (438 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518398|gb|FM888672.1|FM888672 FM888672 Jatropha curcas emb...   509   e-145
gi|268521921|gb|FM892761.1|FM892761 FM892761 Jatropha curcas emb...   250   1e-66
gi|262091385|gb|GT228812.1|GT228812 JC377 Jatropha seeds from fr...    90   2e-18

>gi|268518398|gb|FM888672.1|FM888672 FM888672 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002128,
           mRNA sequence
          Length = 440

 Score =  509 bits (257), Expect = e-145
 Identities = 260/261 (99%)
 Strand = Plus / Plus

                                                                       
Query: 178 atcattgtacaaggaagatcatccaagtcaactaaggttggggacatcatgactgaagag 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcattgtacaaggaagatcatccaagtcaactaaggttggggacatcatgactgaagag 60

                                                                       
Query: 238 aacaagctcattacagtcactcccaacacaaaagttctgcaagcaatgcaattgatgaca 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aacaagctcattacagtcactcccaacacaaaagttctgcaagcaatgcaattgatgaca 120

                                                                       
Query: 298 gataaccgcatcaggcacattcctgtgatcaatgacaaggaaatgattggcatggtgtcc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gataaccgcatcaggcacattcctgtgatcaatgacaaggaaatgattggcatggtgtcc 180

                                                                       
Query: 358 attggagatgttgtccgtgctgtggtggctgaacaccgggaggagctggaacgcctgaat 417
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attggagatgtagtccgtgctgtggtggctgaacaccgggaggagctggaacgcctgaat 240

                                
Query: 418 gcttacatacaaggaggttat 438
           |||||||||||||||||||||
Sbjct: 241 gcttacatacaaggaggttat 261


>gi|268521921|gb|FM892761.1|FM892761 FM892761 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003392,
           mRNA sequence
          Length = 379

 Score =  250 bits (126), Expect = 1e-66
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                       
Query: 313 cacattcctgtgatcaatgacaaggaaatgattggcatggtgtccattggagatgttgtc 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18  cacattcctgtgatcaatgacaaggaaatgattggcatggtgtccattggagatgttgtc 77

                                                                       
Query: 373 cgtgctgtggtggctgaacaccgggaggagctggaacgcctgaatgcttacatacaagga 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  cgtgctgtggtggctgaacaccgggaggagctggaacgcctgaatgcttacatacaagga 137

                 
Query: 433 ggttat 438
           ||||||
Sbjct: 138 ggttat 143


>gi|262091385|gb|GT228812.1|GT228812 JC377 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL07SE.B06.scf 5', mRNA sequence
          Length = 287

 Score = 89.7 bits (45), Expect = 2e-18
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 394 cgggaggagctggaacgcctgaatgcttacatacaaggaggttat 438
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  cgggaggagctggaacgcctgaatgcttacatacaaggaggttat 86