Jatropha Genome Database

JcCB0365731.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0365731.10 + phase: 0 /partial
         (161 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680382|gb|GO246594.1|GO246594 JcrME_RL0138 Expressed seque...   212   9e-56
gi|268523517|gb|FM893840.1|FM893840 FM893840 Jatropha curcas emb...    62   2e-10

>gi|237680382|gb|GO246594.1|GO246594 JcrME_RL0138 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 638

 Score =  212 bits (107), Expect = 9e-56
 Identities = 140/151 (92%)
 Strand = Plus / Plus

                                                                       
Query: 5   aagccatggccaacagctccttcaagtttgaacatcctttggaaagaaggcaggcagaat 64
           |||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 114 aagccatggcaaagagctccttcaagttggaacatcctttggaaaggaggcaggcagaat 173

                                                                       
Query: 65  ctgcccgtattagggagaagtatcctgatagaataccagttattgtggagagggctgaaa 124
           | || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 174 cagctcgaattagggagaagtatcccgatagaataccagttattgtggaaagggctgaaa 233

                                          
Query: 125 gaagtgacatacctgacatcgacaaaaagaa 155
           |||| |||||||||||||| |||||||||||
Sbjct: 234 gaagcgacatacctgacattgacaaaaagaa 264


>gi|268523517|gb|FM893840.1|FM893840 FM893840 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004769,
           mRNA sequence
          Length = 559

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                       
Query: 73  attagggagaagtatcctgatagaataccagttattgtggagagggctgaaagaagtgac 132
           ||||||||||| ||||| |||||||| || || ||||| |||| |||||| |||||||||
Sbjct: 124 attagggagaaatatccagatagaattccggtaattgttgagaaggctgagagaagtgac 183

                      
Query: 133 atacctgacat 143
           || ||| ||||
Sbjct: 184 attcctaacat 194