Jatropha Genome Database

JcCB0364041.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0364041.20 - phase: 2 /partial
         (391 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518942|gb|FM887409.1|FM887409 FM887409 Jatropha curcas emb...    90   2e-18
gi|262090805|gb|GT229163.1|GT229163 JC728 Jatropha seeds from fr...    48   7e-06

>gi|268518942|gb|FM887409.1|FM887409 FM887409 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000608,
           mRNA sequence
          Length = 501

 Score = 89.7 bits (45), Expect = 2e-18
 Identities = 191/239 (79%), Gaps = 3/239 (1%)
 Strand = Plus / Minus

                                                                       
Query: 125 aaccaaccagtttctgttgccattgatgctagtggatttgagtttcaattctattcaagt 184
           ||||||||||| ||||| ||||||||||| ||||| | || ||| || ||||| ||| ||
Sbjct: 376 aaccaaccagtctctgtagccattgatgcaagtggctctgcgttccagttctactcaggt 317

                                                                       
Query: 185 ggaatcttcacagggtcttgtggaactgaactagatcatggtgttgctgctgttggttat 244
           ||| | || |||||   ||||||||| |||||||| ||||| ||| |||| ||||| |||
Sbjct: 316 ggagtatttacaggagattgtggaacggaactagaccatggagttactgcagttgggtat 257

                                                                       
Query: 245 gg---agttaacgatgggaacaagttttggctggtgaagaactcatggggaacacagtgg 301
           ||   |  | ||||||| |  ||||  ||| | ||||||||||||||||||||    |||
Sbjct: 256 ggaacaagtgacgatggtactaagtactggttagtgaagaactcatggggaacttcttgg 197

                                                                      
Query: 302 ggtgaaaaaggatacataagaatgcagagagatatagctgcaaaagaaggcctctgtgg 360
           |||||||| |||||||| |||||| | |||||||| | ||| |||||||| || |||||
Sbjct: 196 ggtgaaaatggatacattagaatggaaagagatattgatgctaaagaaggtctttgtgg 138


>gi|262090805|gb|GT229163.1|GT229163 JC728 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL17SE.C04.scf 5', mRNA sequence
          Length = 626

 Score = 48.1 bits (24), Expect = 7e-06
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 119 gttgcaaaccaaccagtttctgttgccattgatgct 154
           ||||||||||| || || ||||||||||||||||||
Sbjct: 488 gttgcaaaccagcctgtatctgttgccattgatgct 453