Jatropha Genome Database

JcCB0354791.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0354791.10 - phase: 1 /partial
         (308 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525102|gb|FM895744.1|FM895744 FM895744 Jatropha curcas emb...   555   e-158
gi|268521641|gb|FM896849.1|FM896849 FM896849 Jatropha curcas emb...   157   9e-39
gi|268518705|gb|FM888948.1|FM888948 FM888948 Jatropha curcas emb...    80   2e-15
gi|262091368|gb|GT228795.1|GT228795 JC360 Jatropha seeds from fr...    58   6e-09

>gi|268525102|gb|FM895744.1|FM895744 FM895744 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002722,
           mRNA sequence
          Length = 486

 Score =  555 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Minus

                                                                       
Query: 29  aaccaccaagaccgtcatctggaatggaccaatgggagtgtttgaatttgacaagtttgc 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaccaccaagaccgtcatctggaatggaccaatgggagtgtttgaatttgacaagtttgc 427

                                                                       
Query: 89  agttgggacagaggctattgcaaagaagctagcagagctcagtggcaagggagtgacaac 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agttgggacagaggctattgcaaagaagctagcagagctcagtggcaagggagtgacaac 367

                                                                       
Query: 149 aattattggaggtggagattctgttgcagctgtagaaaaagtaggagttgctgatgttat 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aattattggaggtggagattctgttgcagctgtagaaaaagtaggagttgctgatgttat 307

                                                                       
Query: 209 gagccacatatcaactggtggtggtgccagtttggagttgttagaaggaaaagagcttcc 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gagccacatatcaactggtggtggtgccagtttggagttgttagaaggaaaagagcttcc 247

                                                   
Query: 269 aggtgttcttgctcttgatgaagccacaccagttgctgtg 308
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aggtgttcttgctcttgatgaagccacaccagttgctgtg 207


>gi|268521641|gb|FM896849.1|FM896849 FM896849 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004256,
           mRNA sequence
          Length = 615

 Score =  157 bits (79), Expect = 9e-39
 Identities = 199/239 (83%)
 Strand = Plus / Plus

                                                                       
Query: 7   agacattcagtgaagctttggaaaccaccaagaccgtcatctggaatggaccaatgggag 66
           |||||||| |||||||||| || || ||||| || || || ||||||||||||||||| |
Sbjct: 131 agacattctgtgaagctttagatactaccaaaacggttatttggaatggaccaatgggtg 190

                                                                       
Query: 67  tgtttgaatttgacaagtttgcagttgggacagaggctattgcaaagaagctagcagagc 126
           | ||||| || || ||||||||||| || || ||||| ||||| |||||||| |||||||
Sbjct: 191 tatttgagttcgaaaagtttgcagtgggaactgaggcaattgccaagaagcttgcagagc 250

                                                                       
Query: 127 tcagtggcaagggagtgacaacaattattggaggtggagattctgttgcagctgtagaaa 186
           ||||||||||||| |||||||| || ||||||||||| || || ||||| ||||| || |
Sbjct: 251 tcagtggcaagggcgtgacaactatcattggaggtggtgactcagttgctgctgtggaga 310

                                                                      
Query: 187 aagtaggagttgctgatgttatgagccacatatcaactggtggtggtgccagtttggag 245
           | || ||  |||||||    ||||||||||| || ||||| ||||||||||| ||||||
Sbjct: 311 aggttgggcttgctgacaagatgagccacatctcgactggaggtggtgccagcttggag 369


>gi|268518705|gb|FM888948.1|FM888948 FM888948 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002475,
           mRNA sequence
          Length = 490

 Score = 79.8 bits (40), Expect = 2e-15
 Identities = 115/140 (82%)
 Strand = Plus / Minus

                                                                       
Query: 99  gaggctattgcaaagaagctagcagagctcagtggcaagggagtgacaacaattattgga 158
           ||||| ||||| ||||||||  ||||||||||||||||||| |||||||| || ||||||
Sbjct: 480 gaggcaattgccaagaagctttcagagctcagtggcaagggcgtgacaactatcattgga 421

                                                                       
Query: 159 ggtggagattctgttgcagctgtagaaaaagtaggagttgctgatgttatgagccacata 218
           ||||| || || || || ||||| || || || ||  |||||||    ||||||||||| 
Sbjct: 420 ggtggtgactcagtggctgctgtggagaaggttgggcttgctgacaagatgagccacatc 361

                               
Query: 219 tcaactggtggtggtgccag 238
           || ||||| |||||||||||
Sbjct: 360 tcgactggaggtggtgccag 341


>gi|262091368|gb|GT228795.1|GT228795 JC360 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL07SE.B01.scf 5', mRNA sequence
          Length = 468

 Score = 58.0 bits (29), Expect = 6e-09
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 111 aagaagctagcagagctcagtggcaagggagtgacaacaattattggag 159
           ||||||||  ||||||||||||||||||| |||||||| || |||||||
Sbjct: 468 aagaagcttccagagctcagtggcaagggcgtgacaactatcattggag 420