Jatropha Genome Database

JcCB0341121.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0341121.10 + phase: 0 /partial
         (711 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520870|gb|FM889628.1|FM889628 FM889628 Jatropha curcas emb...   480   e-135
gi|268519035|gb|FM887502.1|FM887502 FM887502 Jatropha curcas emb...    94   3e-19

>gi|268520870|gb|FM889628.1|FM889628 FM889628 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003333,
           mRNA sequence
          Length = 547

 Score =  480 bits (242), Expect = e-135
 Identities = 242/242 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagagatcaactatcttgggcaattggagcatcctaatcttgttaagttgattggttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcagagatcaactatcttgggcaattggagcatcctaatcttgttaagttgattggttac 365

                                                                       
Query: 61  tgctttgaggatgaccatcgccttttggtctatgagtttatgccccgtggcagcatggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgctttgaggatgaccatcgccttttggtctatgagtttatgccccgtggcagcatggag 425

                                                                       
Query: 121 aatcatttatttaggagaggctctcatttccagccactttcttggaacattcgtatgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aatcatttatttaggagaggctctcatttccagccactttcttggaacattcgtatgaaa 485

                                                                       
Query: 181 gttgctcttggtgctgcaaaagggcttgcatttcttcatagtgctgatgcaaaagtcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gttgctcttggtgctgcaaaagggcttgcatttcttcatagtgctgatgcaaaagtcata 545

             
Query: 241 ta 242
           ||
Sbjct: 546 ta 547


>gi|268519035|gb|FM887502.1|FM887502 FM887502 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000719,
           mRNA sequence
          Length = 634

 Score = 93.7 bits (47), Expect = 3e-19
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                       
Query: 50  tgattggttactgctttgaggatgaccatcgccttttggtctatgagtttatgccccgtg 109
           |||||||||||||||| |||||||||||||| ||| |||||||||||||| |||||  ||
Sbjct: 578 tgattggttactgcttggaggatgaccatcgacttctggtctatgagtttgtgcccaatg 519

                          
Query: 110 gcagcatggagaatc 124
           ||||| |||||||||
Sbjct: 518 gcagcttggagaatc 504



 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 154 ccactttcttggaacattcgtatgaaagttgctcttggtgctgcaaaagggcttgcattt 213
           ||||| ||||||||  | |||||||||||||| ||||||||||| ||  | || ||||||
Sbjct: 392 ccactctcttggaatctccgtatgaaagttgcccttggtgctgctaagtgtctggcattt 333

                 
Query: 214 cttcat 219
           ||||||
Sbjct: 332 cttcat 327