Jatropha Genome Database

JcCB0329531.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0329531.10 + phase: 2 /TE/partial
         (2518 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520781|gb|FM889539.1|FM889539 FM889539 Jatropha curcas emb...   440   e-123

>gi|268520781|gb|FM889539.1|FM889539 FM889539 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003223,
            mRNA sequence
          Length = 614

 Score =  440 bits (222), Expect = e-123
 Identities = 481/563 (85%), Gaps = 7/563 (1%)
 Strand = Plus / Minus

                                                                        
Query: 478  tttattctagataacaagaaaaatcatctttctaaattcgatgttaaatcttatgaagga 537
            |||||||||||||| |||||| |||||||| ||||||| |||| |||||||||| |||||
Sbjct: 561  tttattctagataataagaaacatcatcttgctaaatttgatgctaaatcttataaagga 502

                                                                        
Query: 538  atttttataggatattctagtaatagtaaatcatatag--tgtttaataagaaaactcta 595
            |||||| ||||||||| ||||||||||||| |||||||  ||||||||||||||||||||
Sbjct: 501  atttttctaggatattttagtaatagtaaagcatatagagtgtttaataagaaaactcta 442

                                                                        
Query: 596  gatgtagaagaatctattcatattgagtttgatgagattgatt-tacttctagaaatata 654
            | ||||||||||||||||||| ||  |||||||||   ||| | ||||||||||| | ||
Sbjct: 441  gttgtagaagaatctattcatgttatgtttgatgaatctgactctacttctagaagttta 382

                                                                        
Query: 655  gaaaatgatgatgttgtagactttaatcaagagaagcagaaagaataatcagaaaaacta 714
            |||||||||||||||||||| | ||||||||| ||| |||| ||| ||| | || |||||
Sbjct: 381  gaaaatgatgatgttgtagattctaatcaagaaaagtagaatgaacaattaaaacaacta 322

                                                                        
Query: 715  gaacagccagaacataagcagaatgatgaaaatcaagctgaaccagaagatggacatgaa 774
            ||||| | |||| || ||||||||| ||| ||||| ||| ||||| |||||| |||||||
Sbjct: 321  gaacaactagaaaatgagcagaatgttgataatcaggctaaaccaaaagatgaacatgaa 262

                                                                        
Query: 775  gagcagaa--caactcagaaagccaaatgctagaactagaaaataaaaatcctgacttac 832
            || |||||  |||||  ||||| ||||||| ||||  ||||||| |||||| | | ||||
Sbjct: 261  gatcagaatgcaact--gaaagtcaaatgccagaaacagaaaatgaaaatcttcaattac 204

                                                                        
Query: 833  caaaagagtagcgattccacaagtatcatactcaggaggacattattaacaacccttcag 892
            ||||||| ||||||||||| | ||||||| |||| |||||||| ||  | || |||||| 
Sbjct: 203  caaaagaatagcgattccataggtatcatcctcaagaggacatcatggataatccttcaa 144

                                                                        
Query: 893  aaaggataatgactagagttcaattaaaaagatatttagataatgttgctttcgtttctc 952
            ||||||| |||||||||| |||||| || |||||||| | |||||||||| || ||||||
Sbjct: 143  aaaggatgatgactagagctcaatttaagagatattttggtaatgttgctgtcatttctc 84

                                                                        
Query: 953  aagtataacgtaaaaatatagaagatgctcaaaatgatgaaagttcaattcttgctatgc 1012
            || || ||| ||||||| | |||||||||||||||||||||||||  |||||||||||||
Sbjct: 83   aattagaacctaaaaatttggaagatgctcaaaatgatgaaagttggattcttgctatgc 24

                                   
Query: 1013 aagaagaaatgaatcaatttgag 1035
            |||||||| | ||||||||||||
Sbjct: 23   aagaagaactaaatcaatttgag 1