Jatropha Genome Database

JcCB0308331.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0308331.10 + phase: 0 /partial
         (180 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523939|gb|FM890625.1|FM890625 FM890625 Jatropha curcas emb...   357   3e-99
gi|218686946|gb|GH295914.1|GH295914 JCL363 Jatropha curcas total...    76   1e-14
gi|218687175|gb|GH296494.1|GH296494 JCL944 Jatropha curcas total...    76   1e-14
gi|218687766|gb|GH296307.1|GH296307 JCL757 Jatropha curcas total...    76   1e-14
gi|268519355|gb|FM887822.1|FM887822 FM887822 Jatropha curcas emb...    68   4e-12

>gi|268523939|gb|FM890625.1|FM890625 FM890625 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000527,
           mRNA sequence
          Length = 453

 Score =  357 bits (180), Expect = 3e-99
 Identities = 180/180 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccttcccgtcgaagaactctcttgaaggtcataatcctcggcgatagcggggtcggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 atgccttcccgtcgaagaactctcttgaaggtcataatcctcggcgatagcggggtcggg 245

                                                                       
Query: 61  aagacctctttgatgaatcaatatgtgaataagaagtttagcaatcaatataaggcaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagacctctttgatgaatcaatatgtgaataagaagtttagcaatcaatataaggcaaca 305

                                                                       
Query: 121 atcggagctgatttcttgactaaggaagtgcagtttgaagataggctcttcactttacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atcggagctgatttcttgactaaggaagtgcagtttgaagataggctcttcactttacag 365


>gi|218686946|gb|GH295914.1|GH295914 JCL363 Jatropha curcas total
           leaf library Jatropha curcas cDNA, mRNA sequence
          Length = 783

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 143 aggaagtgcagtttgaagataggctcttcactttacag 180
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aggaagtgcagtttgaagataggctcttcactttacag 38


>gi|218687175|gb|GH296494.1|GH296494 JCL944 Jatropha curcas total
           leaf library Jatropha curcas cDNA, mRNA sequence
          Length = 783

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 143 aggaagtgcagtttgaagataggctcttcactttacag 180
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aggaagtgcagtttgaagataggctcttcactttacag 38


>gi|218687766|gb|GH296307.1|GH296307 JCL757 Jatropha curcas total
           leaf library Jatropha curcas cDNA, mRNA sequence
          Length = 783

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 143 aggaagtgcagtttgaagataggctcttcactttacag 180
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aggaagtgcagtttgaagataggctcttcactttacag 38


>gi|268519355|gb|FM887822.1|FM887822 FM887822 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001094,
           mRNA sequence
          Length = 564

 Score = 67.9 bits (34), Expect = 4e-12
 Identities = 88/106 (83%)
 Strand = Plus / Plus

                                                                       
Query: 53  gggtcgggaagacctctttgatgaatcaatatgtgaataagaagtttagcaatcaatata 112
           |||| |||||||| ||| | |||||||| ||||||||   ||| || |||||||| || |
Sbjct: 317 gggttgggaagacatctctcatgaatcagtatgtgaaccggaaattcagcaatcagtaca 376

                                                         
Query: 113 aggcaacaatcggagctgatttcttgactaaggaagtgcagtttga 158
           | ||||| || || ||||||||||||||||| ||||| ||||||||
Sbjct: 377 aagcaactattggggctgatttcttgactaaagaagttcagtttga 422