Jatropha Genome Database

JcCB0304081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0304081.10 + phase: 0 
         (408 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516939|gb|FM892491.1|FM892491 FM892491 Jatropha curcas emb...   698   0.0  

>gi|268516939|gb|FM892491.1|FM892491 FM892491 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003054,
           mRNA sequence
          Length = 446

 Score =  698 bits (352), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgactgccctagcccgtatctctagaaaagcactaacctccacgatctccccacag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 24  atggcgactgccctagcccgtatctctagaaaagcactaacgtccacgatctccctacag 83

                                                                       
Query: 61  cgccacctccttaaccgatcgttttccgctgaggcatcaaccaaatcgattactccgtcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  cgccacctccttaaccgatcgttttccgctgaggcatcaaccaaatcgattactccgtcg 143

                                                                       
Query: 121 ccggatcgagtgaagtgggactatcgaggtcagaggcagataatcccgttgggccagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ccggatcgagtgaagtgggactatcgaggtcagaggcagataatcccgttgggccagtgg 203

                                                                       
Query: 181 ctcccgaaggtagccgttgatgcttatgttgcaccaaatgttgttctagcgggtcaagtc 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ctcccgaaggtagccgttgatgcttatgttgcaccaaatgtagttctagcgggtcaagtc 263

                                                                       
Query: 241 accgtatgcgatggagcttcagtttggagcggatcggtcctgcgaggcgatctcaacaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accgtatgcgatggagcttcagtttggagcggatcggtcctgcgaggcgatctcaacaag 323

                                                                       
Query: 301 atcaccgtcggattctgctccaatgtgcaagagaggtgcgtcgttcatgctgcttggaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcaccgtcggattctgctccaatgtgcaagagaggtgcgtcgttcatgctgcttggaac 383

               
Query: 361 tcgc 364
           ||||
Sbjct: 384 tcgc 387