Jatropha Genome Database

JcCB0299251.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0299251.10 + phase: 0 
         (819 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262091312|gb|GT228739.1|GT228739 JC304 Jatropha seeds from fr...   139   6e-33
gi|268524222|gb|FM894901.1|FM894901 FM894901 Jatropha curcas emb...    54   3e-07
gi|237679850|gb|GO247155.1|GO247155 JcrME_RL0699 Expressed seque...    52   1e-06

>gi|262091312|gb|GT228739.1|GT228739 JC304 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL06SE.F09.scf 5', mRNA sequence
          Length = 621

 Score =  139 bits (70), Expect = 6e-33
 Identities = 118/134 (88%)
 Strand = Plus / Plus

                                                                       
Query: 433 cctactcaagcctttaattttgcattcaaagattactttaaaagacttttcaactttaag 492
           |||||||| ||||| || |||||||||||||||||||| || || || |||||||| |||
Sbjct: 80  cctactcaggccttgaactttgcattcaaagattacttcaagaggctcttcaacttcaag 139

                                                                       
Query: 493 aaggaccgcgacggttactggaagtggtttgctggtaacttagcttctggtggcgctgct 552
           || ||| | || || |||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct: 140 aaagacagggatgggtactggaagtggtttgctggaaacttagcatctggtggtgctgct 199

                         
Query: 553 ggtgcttcttccct 566
           ||||||||||||||
Sbjct: 200 ggtgcttcttccct 213



 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                       
Query: 694 ggtattgttggactttaccgtggatttaacatttcctgtgtaggcatagttgtatatcgt 753
           ||||||| ||| ||||||||||| ||||||||||| ||||| || ||  |||| || |||
Sbjct: 307 ggtattgctgggctttaccgtgggtttaacatttcttgtgtgggaattattgtctaccgt 366

                                            
Query: 754 ggtctatattttggattgtatgattctttgaag 786
           ||||| || |||||| |||| ||||||||||||
Sbjct: 367 ggtctgtactttggaatgtacgattctttgaag 399


>gi|268524222|gb|FM894901.1|FM894901 FM894901 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000809,
           mRNA sequence
          Length = 520

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 87/107 (81%)
 Strand = Plus / Plus

                                                                       
Query: 250 aaaactgcagcagctcctcttgaacgtgtaaaactcctaattcaaaatcaaaatgagatg 309
           |||||||| ||||||||  |||| ||||| || ||| | |||||||||||  ||||||||
Sbjct: 413 aaaactgctgcagctccaattgagcgtgttaagctcttgattcaaaatcaggatgagatg 472

                                                          
Query: 310 atcaaagctggtcggctctccgaaccctacaaaggcattggagattg 356
           || |||  |||| | ||||| ||||| ||||| || ||||| |||||
Sbjct: 473 attaaaagtggtagactctcagaaccatacaagggtattggtgattg 519


>gi|237679850|gb|GO247155.1|GO247155 JcrME_RL0699 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 633

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 280 aaactcctaattcaaaatcaaaatgagatgatcaaagctggtcggctctccgaaccctac 339
           |||||| | |||||||||||  ||||||||||||| ||||||||| | || ||||| |||
Sbjct: 389 aaactcttgattcaaaatcaggatgagatgatcaaggctggtcggttatctgaaccatac 448

             
Query: 340 aa 341
           ||
Sbjct: 449 aa 450