Jatropha Genome Database

JcCB0295461.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0295461.10 + phase: 2 /partial
         (838 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516578|gb|FM887057.1|FM887057 FM887057 Jatropha curcas emb...   539   e-153
gi|268518309|gb|FM888583.1|FM888583 FM888583 Jatropha curcas emb...   406   e-113

>gi|268516578|gb|FM887057.1|FM887057 FM887057 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000127,
           mRNA sequence
          Length = 472

 Score =  539 bits (272), Expect = e-153
 Identities = 272/272 (100%)
 Strand = Plus / Minus

                                                                       
Query: 567 ctagagaagatgaatgccttattttagccagtgatgggctgtgggatgtcatgacaaatg 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctagagaagatgaatgccttattttagccagtgatgggctgtgggatgtcatgacaaatg 413

                                                                       
Query: 627 atgaagtctgtgaagtggctcgaaagcggattttgctctggcacaaaaagaacggattta 686
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atgaagtctgtgaagtggctcgaaagcggattttgctctggcacaaaaagaacggattta 353

                                                                       
Query: 687 catctcttgctgaaagaggcaatggaattgatcccgcgtctcaagcagcagctgattacc 746
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 catctcttgctgaaagaggcaatggaattgatcccgcgtctcaagcagcagctgattacc 293

                                                                       
Query: 747 tttcaatgctggccttgcaaaaaggaagcaaggacaacatctcagtgattgtggtggatt 806
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tttcaatgctggccttgcaaaaaggaagcaaggacaacatctcagtgattgtggtggatt 233

                                           
Query: 807 tgaaagctcaaaggaagttcaagagcaaatct 838
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tgaaagctcaaaggaagttcaagagcaaatct 201


>gi|268518309|gb|FM888583.1|FM888583 FM888583 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002023,
           mRNA sequence
          Length = 579

 Score =  406 bits (205), Expect = e-113
 Identities = 224/229 (97%), Gaps = 1/229 (0%)
 Strand = Plus / Minus

                                                                       
Query: 610 ggatgtcatgacaaatgatgaagtctgtgaagtggctcgaaagcggattttgctctggca 669
           ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||
Sbjct: 579 ggatgtcatgacaaatgagaaagtctgtgaagtggctcgaaagcggatttggctctggca 520

                                                                       
Query: 670 caaaaagaacggatttacatctcttgctgaaagaggcaatggaattgatcccgcgtctca 729
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 519 caaaaagaacggatttacatctcctg-tgaaagaggcaatggaattgatcccgcgtctca 461

                                                                       
Query: 730 agcagcagctgattacctttcaatgctggccttgcaaaaaggaagcaaggacaacatctc 789
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agcagcagctgattacctttcaatgctggccttgcaaaaaggaagcaaggacaacatctc 401

                                                            
Query: 790 agtgattgtggtggatttgaaagctcaaaggaagttcaagagcaaatct 838
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agtgattgtggtggatttgaaagctcaaaggaagttcaagagcaaatct 352