Jatropha Genome Database

JcCB0293861.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0293861.20 - phase: 0 /partial
         (306 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268519705|gb|FM888172.1|FM888172 FM888172 Jatropha curcas emb...   135   3e-32
gi|262091131|gb|GT228558.1|GT228558 JC123 Jatropha seeds from fr...   131   5e-31
gi|237680975|gb|GO247611.1|GO247611 JcrME_RL1155 Expressed seque...   103   1e-22
gi|262091312|gb|GT228739.1|GT228739 JC304 Jatropha seeds from fr...    86   3e-17

>gi|268519705|gb|FM888172.1|FM888172 FM888172 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001520,
           mRNA sequence
          Length = 383

 Score =  135 bits (68), Expect = 3e-32
 Identities = 149/176 (84%)
 Strand = Plus / Plus

                                                                       
Query: 82  attgacactgttcgtagaagaatgatgatgacatcaggtgaagctgttaagtataagagc 141
           ||||| ||||| |||||||||||||||||||| || ||||||||||| ||||| ||||| 
Sbjct: 81  attgatactgtccgtagaagaatgatgatgacctctggtgaagctgtcaagtacaagagt 140

                                                                       
Query: 142 tcattcgatgccttctctcagataattaagaatgaaggggctaaatctctgttcaaaggt 201
           ||  | |||||||||||||||||  | |||||||| || || || ||||| ||||| |||
Sbjct: 141 tctcttgatgccttctctcagatcttgaagaatgagggtgccaagtctctcttcaagggt 200

                                                                   
Query: 202 ggaggtgcaaacatcctgcgcgcaattgctggtgctggtgttcttgctggatatga 257
           | ||| |||||||| || || || ||||||||||||||||| |||||||| |||||
Sbjct: 201 gcaggagcaaacattctccgtgctattgctggtgctggtgtgcttgctggttatga 256


>gi|262091131|gb|GT228558.1|GT228558 JC123 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone Contig125 5', mRNA sequence
          Length = 542

 Score =  131 bits (66), Expect = 5e-31
 Identities = 174/210 (82%)
 Strand = Plus / Plus

                                                                       
Query: 95  gtagaagaatgatgatgacatcaggtgaagctgttaagtataagagctcattcgatgcct 154
           ||||||| ||||||||||| ||||| |||||||| ||||| |||||||| || ||||| |
Sbjct: 45  gtagaaggatgatgatgacctcaggagaagctgtgaagtacaagagctctttggatgcat 104

                                                                       
Query: 155 tctctcagataattaagaatgaaggggctaaatctctgttcaaaggtggaggtgcaaaca 214
           | |||||||| || |||||||||||| ||||||| || ||||| || |  ||||||||||
Sbjct: 105 tttctcagatcatcaagaatgaagggactaaatccctcttcaagggagctggtgcaaaca 164

                                                                       
Query: 215 tcctgcgcgcaattgctggtgctggtgttcttgctggatatgataagcttcaggttattg 274
           |||| || ||  | || |||| |||||| ||||| || ||||| || |||||| ||||||
Sbjct: 165 tccttcgtgctgtagcaggtgttggtgtgcttgccggttatgacaaacttcagcttattg 224

                                         
Query: 275 catttggaaagaaatatggttctggaggag 304
             ||||| ||||||||||| ||||| ||||
Sbjct: 225 tctttggcaagaaatatggatctggcggag 254


>gi|237680975|gb|GO247611.1|GO247611 JcrME_RL1155 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 675

 Score =  103 bits (52), Expect = 1e-22
 Identities = 175/212 (82%), Gaps = 3/212 (1%)
 Strand = Plus / Minus

                                                                       
Query: 94  cgtagaagaatgatgatgacatcaggtg-aagctgttaagtataagagctcattcgatgc 152
           ||||||||| |||||||||| ||||| | ||||||  ||||| |||||||| || |||||
Sbjct: 497 cgtagaaga-tgatgatgacctcagggggaagctgggaagtacaagagctc-ttggatgc 440

                                                                       
Query: 153 cttctctcagataattaagaatgaaggggctaaatctctgttcaaaggtggaggtgcaaa 212
            || |||||||| || |||||||||||| ||||||| || ||||| || |  ||||||||
Sbjct: 439 attttctcagatcatcaagaatgaagggactaaatccctcttcaagggagctggtgcaaa 380

                                                                       
Query: 213 catcctgcgcgcaattgctggtgctggtgttcttgctggatatgataagcttcaggttat 272
           |||||| || ||  | || ||||||||||| ||||| || ||||| || |||||| ||||
Sbjct: 379 catccttcgtgctgtagcaggtgctggtgtgcttgccggttatgacaaacttcagcttat 320

                                           
Query: 273 tgcatttggaaagaaatatggttctggaggag 304
           ||  ||||| ||||||||||| ||||| ||||
Sbjct: 319 tgtctttggcaagaaatatggatctggcggag 288


>gi|262091312|gb|GT228739.1|GT228739 JC304 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL06SE.F09.scf 5', mRNA sequence
          Length = 621

 Score = 85.7 bits (43), Expect = 3e-17
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                       
Query: 82  attgacactgttcgtagaagaatgatgatgacatcaggtgaagctgttaagtataagagc 141
           ||||| ||||| |||||||||||||||||||| || ||||||||||| ||||| ||||| 
Sbjct: 496 attgatactgtccgtagaagaatgatgatgacctctggtgaagctgtcaagtacaagagt 555

                                  
Query: 142 tcattcgatgccttctctcagat 164
           ||  | |||||||||||||||||
Sbjct: 556 tctcttgatgccttctctcagat 578