Jatropha Genome Database
- JcCB0289141.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0289141.10 + phase: 2 /partial
(592 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|218687494|gb|GH296148.1|GH296148 JCL597 Jatropha curcas total... 147 2e-35
gi|218687681|gb|GH295754.1|GH295754 JCL203 Jatropha curcas total... 147 2e-35
gi|218687578|gb|GH296171.1|GH296171 JCL620 Jatropha curcas total... 137 2e-32
gi|218687730|gb|GH295777.1|GH295777 JCL226 Jatropha curcas total... 137 2e-32
gi|218686973|gb|GH295941.1|GH295941 JCL390 Jatropha curcas total... 60 3e-09
gi|218687037|gb|GH296421.1|GH296421 JCL871 Jatropha curcas total... 60 3e-09
gi|218687642|gb|GH296235.1|GH296235 JCL684 Jatropha curcas total... 60 3e-09
gi|218687819|gb|GH296334.1|GH296334 JCL784 Jatropha curcas total... 60 3e-09
gi|218687859|gb|GH295841.1|GH295841 JCL290 Jatropha curcas total... 60 3e-09
gi|268521463|gb|FM894215.1|FM894215 FM894215 Jatropha curcas emb... 50 3e-06
gi|268524171|gb|FM894850.1|FM894850 FM894850 Jatropha curcas emb... 50 3e-06
>gi|218687494|gb|GH296148.1|GH296148 JCL597 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 442
Score = 147 bits (74), Expect = 2e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 519 gcacatttttccttgaatacaccgtcttgtccgccactgaccctaaacggaaagcccgtg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcacatttttccttgaatacaccgtcttgtccgccactgaccctaaacggaaagcccgtg 60
Query: 579 actcccatgttccg 592
||||||||||||||
Sbjct: 61 actcccatgttccg 74
>gi|218687681|gb|GH295754.1|GH295754 JCL203 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 442
Score = 147 bits (74), Expect = 2e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 519 gcacatttttccttgaatacaccgtcttgtccgccactgaccctaaacggaaagcccgtg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcacatttttccttgaatacaccgtcttgtccgccactgaccctaaacggaaagcccgtg 60
Query: 579 actcccatgttccg 592
||||||||||||||
Sbjct: 61 actcccatgttccg 74
>gi|218687578|gb|GH296171.1|GH296171 JCL620 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 438
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 524 tttttccttgaatacaccgtcttgtccgccactgaccctaaacggaaagcccgtgactcc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttttccttgaatacaccgtcttgtccgccactgaccctaaacggaaagcccgtgactcc 60
Query: 584 catgttccg 592
|||||||||
Sbjct: 61 catgttccg 69
>gi|218687730|gb|GH295777.1|GH295777 JCL226 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 438
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 524 tttttccttgaatacaccgtcttgtccgccactgaccctaaacggaaagcccgtgactcc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttttccttgaatacaccgtcttgtccgccactgaccctaaacggaaagcccgtgactcc 60
Query: 584 catgttccg 592
|||||||||
Sbjct: 61 catgttccg 69
>gi|218686973|gb|GH295941.1|GH295941 JCL390 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 782
Score = 60.0 bits (30), Expect = 3e-09
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 237 ttgcttggtcttttggtagcacgattttcattcttgtctattgcaccgctgggatttctg 296
|||||||| |||||||| | | ||||||| |||||| || || || ||||| ||||| |
Sbjct: 112 ttgcttgggcttttggtggaatgattttcgctcttgtatactgtactgctggtatttcag 171
Query: 297 gaggtcatattaatcctgcggtgacgttcgggctgttgctggcaag 342
|||| || || ||||| |||||||| ||||||||||| |||||||
Sbjct: 172 gaggacacataaatccggcggtgaccttcgggctgttcttggcaag 217
>gi|218687037|gb|GH296421.1|GH296421 JCL871 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 826
Score = 60.0 bits (30), Expect = 3e-09
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 237 ttgcttggtcttttggtagcacgattttcattcttgtctattgcaccgctgggatttctg 296
|||||||| |||||||| | | ||||||| |||||| || || || ||||| ||||| |
Sbjct: 43 ttgcttgggcttttggtggaatgattttcgctcttgtatactgtactgctggtatttcag 102
Query: 297 gaggtcatattaatcctgcggtgacgttcgggctgttgctggcaag 342
|||| || || ||||| |||||||| ||||||||||| |||||||
Sbjct: 103 gaggacacataaatccggcggtgaccttcgggctgttcttggcaag 148
>gi|218687642|gb|GH296235.1|GH296235 JCL684 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 826
Score = 60.0 bits (30), Expect = 3e-09
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 237 ttgcttggtcttttggtagcacgattttcattcttgtctattgcaccgctgggatttctg 296
|||||||| |||||||| | | ||||||| |||||| || || || ||||| ||||| |
Sbjct: 43 ttgcttgggcttttggtggaatgattttcgctcttgtatactgtactgctggtatttcag 102
Query: 297 gaggtcatattaatcctgcggtgacgttcgggctgttgctggcaag 342
|||| || || ||||| |||||||| ||||||||||| |||||||
Sbjct: 103 gaggacacataaatccggcggtgaccttcgggctgttcttggcaag 148
>gi|218687819|gb|GH296334.1|GH296334 JCL784 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 782
Score = 60.0 bits (30), Expect = 3e-09
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 237 ttgcttggtcttttggtagcacgattttcattcttgtctattgcaccgctgggatttctg 296
|||||||| |||||||| | | ||||||| |||||| || || || ||||| ||||| |
Sbjct: 112 ttgcttgggcttttggtggaatgattttcgctcttgtatactgtactgctggtatttcag 171
Query: 297 gaggtcatattaatcctgcggtgacgttcgggctgttgctggcaag 342
|||| || || ||||| |||||||| ||||||||||| |||||||
Sbjct: 172 gaggacacataaatccggcggtgaccttcgggctgttcttggcaag 217
>gi|218687859|gb|GH295841.1|GH295841 JCL290 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 826
Score = 60.0 bits (30), Expect = 3e-09
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 237 ttgcttggtcttttggtagcacgattttcattcttgtctattgcaccgctgggatttctg 296
|||||||| |||||||| | | ||||||| |||||| || || || ||||| ||||| |
Sbjct: 43 ttgcttgggcttttggtggaatgattttcgctcttgtatactgtactgctggtatttcag 102
Query: 297 gaggtcatattaatcctgcggtgacgttcgggctgttgctggcaag 342
|||| || || ||||| |||||||| ||||||||||| |||||||
Sbjct: 103 gaggacacataaatccggcggtgaccttcgggctgttcttggcaag 148
>gi|268521463|gb|FM894215.1|FM894215 FM894215 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004515,
mRNA sequence
Length = 625
Score = 50.1 bits (25), Expect = 3e-06
Identities = 112/141 (79%)
Strand = Plus / Plus
Query: 211 atgtggcggcgttggtcttcttggcgttgcttggtcttttggtagcacgattttcattct 270
|||||| || ||||||||| | ||| |||| ||| | |||||| ||| ||| || || ||
Sbjct: 276 atgtggtggagttggtcttttgggcattgcatgggcctttggtggcatgatctttatcct 335
Query: 271 tgtctattgcaccgctgggatttctggaggtcatattaatcctgcggtgacgttcgggct 330
||| || ||||| || || || ||||| ||||||||||| || || ||||| || |||||
Sbjct: 336 tgtttactgcactgccggtatatctggtggtcatattaacccagcagtgacctttgggct 395
Query: 331 gttgctggcaaggaaggtgtc 351
||| | ||||| ||||||||
Sbjct: 396 gtttttagcaagaaaggtgtc 416
>gi|268524171|gb|FM894850.1|FM894850 FM894850 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000739,
mRNA sequence
Length = 491
Score = 50.1 bits (25), Expect = 3e-06
Identities = 112/141 (79%)
Strand = Plus / Plus
Query: 211 atgtggcggcgttggtcttcttggcgttgcttggtcttttggtagcacgattttcattct 270
|||||| || ||||||||| | ||| |||| ||| | |||||| ||| ||| || || ||
Sbjct: 270 atgtggtggagttggtcttttgggcattgcatgggcctttggtggcatgatctttatcct 329
Query: 271 tgtctattgcaccgctgggatttctggaggtcatattaatcctgcggtgacgttcgggct 330
||| || ||||| || || || ||||| ||||||||||| || || ||||| || |||||
Sbjct: 330 tgtttactgcactgccggtatatctggtggtcatattaacccagcagtgacctttgggct 389
Query: 331 gttgctggcaaggaaggtgtc 351
||| | ||||| ||||||||
Sbjct: 390 gtttttagcaagaaaggtgtc 410