Jatropha Genome Database

JcCB0285141.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0285141.10 - phase: 0 /partial
         (1237 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518770|gb|FM889013.1|FM889013 FM889013 Jatropha curcas emb...    78   3e-14
gi|262090951|gb|GT229309.1|GT229309 JC874 Jatropha seeds from fr...    70   7e-12

>gi|268518770|gb|FM889013.1|FM889013 FM889013 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002563,
            mRNA sequence
          Length = 352

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 126/155 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1072 ggatgggacttgaaacttggggagctggcaagaatttggaagggtggttgcattattcgt 1131
            ||||||||||||||||| || || ||||| || ||||||||||| || ||||||||  | 
Sbjct: 2    ggatgggacttgaaactgggagaactggctaggatttggaagggaggctgcattatcaga 61

                                                                        
Query: 1132 gctgtgttcttgaaccgtatcaagcaggcatatgatagaaacccagatctaccaaatctt 1191
            |||||||| ||  || | |||||| |||| |||||||| ||  | |||||  | || |||
Sbjct: 62   gctgtgtttttagacagaatcaagaaggcctatgataggaatgctgatctggccaacctt 121

                                               
Query: 1192 cttgtagatccagagtttgcaagggagattattga 1226
            ||||| |||||||||||||||| ||| || |||||
Sbjct: 122  cttgttgatccagagtttgcaaaggaaataattga 156


>gi|262090951|gb|GT229309.1|GT229309 JC874 Jatropha seeds from fruits
            at three stages of maturation Jatropha curcas cDNA clone
            PL21SE.G04.scf 5', mRNA sequence
          Length = 638

 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 122/151 (80%)
 Strand = Plus / Plus

                                                                        
Query: 1076 gggacttgaaacttggggagctggcaagaatttggaagggtggttgcattattcgtgctg 1135
            ||||||||||||| || || ||||| || ||||||||||| || ||||||||  | ||||
Sbjct: 42   gggacttgaaactgggagaactggctaggatttggaagggaggctgcattatcagagctg 101

                                                                        
Query: 1136 tgttcttgaaccgtatcaagcaggcatatgatagaaacccagatctaccaaatcttcttg 1195
            |||| ||  || | |||||| |||| |||||||| ||  | |||||  | || |||||||
Sbjct: 102  tgtttttagacagaatcaagaaggcctatgataggaatgctgatctggccaaccttcttg 161

                                           
Query: 1196 tagatccagagtttgcaagggagattattga 1226
            | |||||||||||||||| ||| || |||||
Sbjct: 162  ttgatccagagtttgcaaaggaaataattga 192