Jatropha Genome Database

JcCB0280981.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0280981.10 + phase: 1 /pseudo/partial
         (808 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520589|gb|FM889347.1|FM889347 FM889347 Jatropha curcas emb...   165   1e-40

>gi|268520589|gb|FM889347.1|FM889347 FM889347 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002991,
           mRNA sequence
          Length = 535

 Score =  165 bits (83), Expect = 1e-40
 Identities = 227/275 (82%)
 Strand = Plus / Plus

                                                                       
Query: 444 aaagaagccattcatgtaattagttgtggatatgaagacaagacagaatggggcaaagag 503
           ||||| || |||||||| || || ||||| ||||| ||||| ||||| ||||| |  |||
Sbjct: 68  aaagaggctattcatgttatcagctgtgggtatgaggacaaaacagattggggaagcgag 127

                                                                       
Query: 504 attggatggatctacggttctgtgacagaagatattttaactgggtttaagatgcatgca 563
           |||||||||||||| |||||||| |||||||||||| | ||||| |||||||||||||| 
Sbjct: 128 attggatggatctatggttctgttacagaagatattcttactggatttaagatgcatgcc 187

                                                                       
Query: 564 cgtggttggatatcaatctattgtatgcctccacgcccagcatttaaggggtctgctcct 623
           |||||||||   ||||| || || |||||    || ||||| ||||| ||||||||||| 
Sbjct: 188 cgtggttggcggtcaatttactgcatgcccaagcgtccagcttttaaagggtctgctccc 247

                                                                       
Query: 624 atcaatctttctgatcggttgaaccaggtgcttcggtgggccttgggatcaattgaaatt 683
           || |||||||| ||||| |||||||| |||||||| ||||| ||||| ||| | ||||||
Sbjct: 248 attaatctttcagatcgtttgaaccaagtgcttcgatgggctttgggttcagtggaaatt 307

                                              
Query: 684 ttgctgagcaggcattgtccaatatggtatggtta 718
            |  | ||  ||||||||||||| |||||||||||
Sbjct: 308 cttttcagtcggcattgtccaatttggtatggtta 342