Jatropha Genome Database

JcCB0259591.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0259591.20 - phase: 0 
         (1338 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525595|gb|FM890850.1|FM890850 FM890850 Jatropha curcas emb...   809   0.0  

>gi|268525595|gb|FM890850.1|FM890850 FM890850 Jatropha curcas embryo
            56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000804,
            mRNA sequence
          Length = 481

 Score =  809 bits (408), Expect = 0.0
 Identities = 441/451 (97%), Gaps = 1/451 (0%)
 Strand = Plus / Plus

                                                                        
Query: 777  cgcaaaaccggacattaaactataccaaaagggaattagagaaagagtaagacaaaagat 836
            |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31   cgcaaaaccggcacttaaactataccaaaagggaattagagaaagagtaagacaaaagat 90

                                                                        
Query: 837  aaacggtggaaaggtgatcaaggtggaagcgcatccaataccggagcacccacgtcctgt 896
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91   aaacggtggaaaggtgatcaaggtggaagcgcatccaataccggagcacccacgtcctgt 150

                                                                        
Query: 897  gagagtacgaggacgggtggcactggtgggagacgcggcggggtacgtgacgaagtgctc 956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151  gagagtacgaggacgggtggcactggtgggagacgcggcggggtacgtgacgaagtgctc 210

                                                                        
Query: 957  cg-gcgaagggatatattttgcggcgaaatcaggaagaatgtgcggcgaggcgatagtga 1015
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211  cgtgcgaagggatatattttgcggcgaaatcaggaagaatgtgcggcgaggcgatagtga 270

                                                                        
Query: 1016 aagcatcagaaggaggagagaaaagggtgaaagaggaagatttgaaaagagggtatttga 1075
            ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 271  aagcatcagaaagaggagagaaaagggtgaaagatgaagatttgaaaagagggtatttga 330

                                                                        
Query: 1076 aagagtgggataagaaatattacagtacttttaggtttttggatttgttgcagagggttt 1135
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 331  aagagtgggataagaaatattacagtacttttaggtttttggatttgttgcanagggttt 390

                                                                        
Query: 1136 tctatggctctaatatggctagagaagcattggttgagctttgtggagatgagtatgtgc 1195
            ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 391  tctatggctctaatatggctaaagaagccttggttgagctttgtggagatgagtatgtgc 450

                                           
Query: 1196 agagaatgacatttgatagctatttgtataa 1226
            ||||||||||||||||| |||||||||||||
Sbjct: 451  agagaatgacatttgatcgctatttgtataa 481