Jatropha Genome Database

JcCB0254711.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0254711.10 + phase: 0 /partial
         (765 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524325|gb|FM895005.1|FM895005 FM895005 Jatropha curcas emb...    54   2e-07

>gi|268524325|gb|FM895005.1|FM895005 FM895005 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001334,
           mRNA sequence
          Length = 541

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 472 tttgaatgtgtacatgatggttggggtgttgctgttctggttggagtgccacacaaagaa 531
           ||||||||||| |||||||| ||| | || ||||| || || || || ||  ||||||||
Sbjct: 429 tttgaatgtgttcatgatggatggcgggtggctgtgctcgtcggggtaccgaacaaagaa 370

                                                                       
Query: 532 gcagttttcaagacccatcccatgaatgtcttgaatgaaagaactctcaaaggtacattc 591
           |||||||| | |||| | || || ||| |  | |||||||||||||| ||||| || |||
Sbjct: 369 gcagtttttatgaccaagccaatcaatttgcttaatgaaagaactctaaaaggaactttc 310

                      
Query: 592 tttggaaacta 602
           ||||| |||||
Sbjct: 309 tttgggaacta 299