Jatropha Genome Database

JcCB0254461.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0254461.20 - phase: 0 
         (918 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed seque...   264   2e-70

>gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 619

 Score =  264 bits (133), Expect = 2e-70
 Identities = 286/337 (84%)
 Strand = Plus / Plus

                                                                       
Query: 568 gttggtcataaaagcaaaaaccaagaagcattgctaagacttattgatgatataattgaa 627
           |||||||||||||||||||||||||| || ||| ||  | |||||||||| ||| ||| |
Sbjct: 14  gttggtcataaaagcaaaaaccaagaggcgttgttagaagttattgatgacatagttgta 73

                                                                       
Query: 628 tcaacaggaggtgttagtatatctgacatatttccttccttaaaatggcttccttcagtc 687
           |||  |||||||| |||||||  ||| || ||||||||| || ||||||||||| | | |
Sbjct: 74  tcaggaggaggtgctagtatagttgatatctttccttccctacaatggcttcctactgcc 133

                                                                       
Query: 688 caaagggaaaggtctagaattaggaaattgcattatgaaacagatgagatccttgaagat 747
            | |||||||| || |||||| ||||||||||  |  | ||||||||||| || ||||||
Sbjct: 134 aagagggaaagatcaagaatttggaaattgcaccaaaatacagatgagattctcgaagat 193

                                                                       
Query: 748 attttacaagagcatagagctaacaggcaggctgcggcttccaggaaaggcgatcggagg 807
           || |||||||||||||||||||| || |||||  | ||||||| |||  | ||| |||| 
Sbjct: 194 atcttacaagagcatagagctaaaagacaggcgacagcttccaagaattgggataggagc 253

                                                                       
Query: 808 ggagctgataatcttcttgatgttcttttggatcttcaagaaagtggaaatcttgatgtt 867
           | ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 254 gaagctgataatcttcttgatgttcttttggatcttcaacagagcggaaatcttgatgtt 313

                                                
Query: 868 cctttaactgatgtcgctatcaaagcagcaatcattg 904
           ||||||||||||||||| |||||||||||||| ||||
Sbjct: 314 cctttaactgatgtcgccatcaaagcagcaattattg 350