Jatropha Genome Database
- JcCB0252341.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0252341.10 + phase: 1 /partial
(302 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|218687349|gb|GH296003.1|GH296003 JCL452 Jatropha curcas total... 494 e-140
gi|218687562|gb|GH295609.1|GH295609 JCL58 Jatropha curcas total ... 494 e-140
gi|268525970|gb|FM891226.1|FM891226 FM891226 Jatropha curcas emb... 494 e-140
gi|268519495|gb|FM887962.1|FM887962 FM887962 Jatropha curcas emb... 470 e-133
gi|268526374|gb|FM891630.1|FM891630 FM891630 Jatropha curcas emb... 440 e-124
gi|262091114|gb|GT228541.1|GT228541 JC106 Jatropha seeds from fr... 375 e-104
gi|268525249|gb|FM895891.1|FM895891 FM895891 Jatropha curcas emb... 373 e-104
gi|268521693|gb|FM894289.1|FM894289 FM894289 Jatropha curcas emb... 232 2e-61
gi|268523685|gb|FM892218.1|FM892218 FM892218 Jatropha curcas emb... 159 2e-39
gi|237680669|gb|GO246820.1|GO246820 JcrME_RL0364 Expressed seque... 105 3e-23
gi|268524233|gb|FM894912.1|FM894912 FM894912 Jatropha curcas emb... 100 2e-21
>gi|218687349|gb|GH296003.1|GH296003 JCL452 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 840
Score = 494 bits (249), Expect = e-140
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 54 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 534
Query: 114 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 594
Query: 174 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 654
Query: 234 gagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagct 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagct 714
Query: 294 ggggctgcc 302
|||||||||
Sbjct: 715 ggggctgcc 723
>gi|218687562|gb|GH295609.1|GH295609 JCL58 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 840
Score = 494 bits (249), Expect = e-140
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 54 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 534
Query: 114 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 594
Query: 174 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 654
Query: 234 gagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagct 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagct 714
Query: 294 ggggctgcc 302
|||||||||
Sbjct: 715 ggggctgcc 723
>gi|268525970|gb|FM891226.1|FM891226 FM891226 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001350,
mRNA sequence
Length = 638
Score = 494 bits (249), Expect = e-140
Identities = 249/249 (100%)
Strand = Plus / Minus
Query: 54 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 389
Query: 114 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 329
Query: 174 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 269
Query: 234 gagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagct 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagct 209
Query: 294 ggggctgcc 302
|||||||||
Sbjct: 208 ggggctgcc 200
>gi|268519495|gb|FM887962.1|FM887962 FM887962 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001259,
mRNA sequence
Length = 651
Score = 470 bits (237), Expect = e-133
Identities = 246/249 (98%)
Strand = Plus / Plus
Query: 54 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 375
Query: 114 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 435
Query: 174 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 495
Query: 234 gagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagct 293
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 496 gagggtaaggagctggagttctacatgaagaagatccagaggaagaaagggcagggagct 555
Query: 294 ggggctgcc 302
|||||||||
Sbjct: 556 ggggctgcc 564
>gi|268526374|gb|FM891630.1|FM891630 FM891630 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001966,
mRNA sequence
Length = 436
Score = 440 bits (222), Expect = e-124
Identities = 244/250 (97%), Gaps = 1/250 (0%)
Strand = Plus / Minus
Query: 54 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 355
Query: 114 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 173
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 354 aagagacagcagactctaaagcttgatcctcatattgaagaacaatttgctggtggtcct 295
Query: 174 ctaatggcttgtatctca-tcacgccctggtcagtgtggccgtgctgatgggtatattct 232
||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 294 ctaatcgcttgtatctcactcacgccctggtcagtctggccgtgctgatgggtatattct 235
Query: 233 ggagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ggagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagc 175
Query: 293 tggggctgcc 302
||||||||||
Sbjct: 174 tggggctgcc 165
>gi|262091114|gb|GT228541.1|GT228541 JC106 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone Contig108 5', mRNA sequence
Length = 582
Score = 375 bits (189), Expect = e-104
Identities = 229/241 (95%), Gaps = 1/241 (0%)
Strand = Plus / Plus
Query: 54 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 182
Query: 114 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 173
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 183 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatgggctggtggtcgt 242
Query: 174 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 233
|| |||||||||||||||||||| |||||||| |||||| | ||||||||||| || |||
Sbjct: 243 ct-atggcttgtatctcatcacgacctggtcaatgtggcagagctgatgggtacatactg 301
Query: 234 gagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagct 293
||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 302 gagggtaaggaactggagttctacatgaagaagatccaaaagaagaagggcaagggagct 361
Query: 294 g 294
|
Sbjct: 362 g 362
>gi|268525249|gb|FM895891.1|FM895891 FM895891 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002891,
mRNA sequence
Length = 408
Score = 373 bits (188), Expect = e-104
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 115 agagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgtc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgtc 64
Query: 175 taatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctgg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 taatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctgg 124
Query: 235 agggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagctg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagctg 184
Query: 295 gggctgcc 302
||||||||
Sbjct: 185 gggctgcc 192
>gi|268521693|gb|FM894289.1|FM894289 FM894289 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004602,
mRNA sequence
Length = 403
Score = 232 bits (117), Expect = 2e-61
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 54 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 346
Query: 114 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggt 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggt 403
>gi|268523685|gb|FM892218.1|FM892218 FM892218 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_002710,
mRNA sequence
Length = 284
Score = 159 bits (80), Expect = 2e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 223 ggtatattctggagggtaaggagctggagttctacatgaagaagatccagaggaagaagg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggtatattctggagggtaaggagctggagttctacatgaagaagatccagaggaagaagg 64
Query: 283 gcaagggagctggggctgcc 302
||||||||||||||||||||
Sbjct: 65 gcaagggagctggggctgcc 84
>gi|237680669|gb|GO246820.1|GO246820 JcrME_RL0364 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 671
Score = 105 bits (53), Expect = 3e-23
Identities = 95/109 (87%)
Strand = Plus / Minus
Query: 186 atctcatcacgccctggtcagtgtggccgtgctgatgggtatattctggagggtaaggag 245
|||||||| || |||||||| |||||| | ||||||||||| || |||||||||||||
Sbjct: 309 atctcatctcgacctggtcaatgtggcagagctgatgggtacatattggagggtaaggaa 250
Query: 246 ctggagttctacatgaagaagatccagaggaagaagggcaagggagctg 294
|| |||||||| |||||||||||||| | ||||||||||||||| ||||
Sbjct: 249 cttgagttctatatgaagaagatccaaaagaagaagggcaagggtgctg 201
>gi|268524233|gb|FM894912.1|FM894912 FM894912 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000821,
mRNA sequence
Length = 635
Score = 99.6 bits (50), Expect = 2e-21
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 186 atctcatcacgccctggtcagtgtggccgtgctgatgggtatattctggagggtaaggag 245
|||||||| || |||||||| |||||| | ||||||||||| || |||||||||||||
Sbjct: 419 atctcatctcgacctggtcaatgtggcagagctgatgggtacatattggagggtaaggaa 478
Query: 246 ctggagttctacatgaagaagatccagaggaagaagggcaagggagctg 294
|| |||||||| |||||||||||||| | |||||||||||| || ||||
Sbjct: 479 cttgagttctatatgaagaagatccaaaagaagaagggcaanggtgctg 527