Jatropha Genome Database

JcCB0244361.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0244361.20 - phase: 0 /pseudo/partial/short
         (152 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517314|gb|FM887256.1|FM887256 FM887256 Jatropha curcas emb...   192   7e-50
gi|268519654|gb|FM888121.1|FM888121 FM888121 Jatropha curcas emb...   192   7e-50
gi|268519210|gb|FM887677.1|FM887677 FM887677 Jatropha curcas emb...   178   1e-45

>gi|268517314|gb|FM887256.1|FM887256 FM887256 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000414,
           mRNA sequence
          Length = 315

 Score =  192 bits (97), Expect = 7e-50
 Identities = 115/121 (95%)
 Strand = Plus / Minus

                                                                       
Query: 32  gtaatcgattagttaacacgttgattaactgtattctgaaacatggacaaaaatcattgg 91
           |||||||||||||||||| |||| ||||| ||||||||||||| ||| ||||||||||||
Sbjct: 163 gtaatcgattagttaacatgttggttaaccgtattctgaaacacggaaaaaaatcattgg 104

                                                                       
Query: 92  cttatcaaattatctatcgagccatgaaaaagattcaacaaaagacataaacaaatccac 151
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 103 cttatcaaattatctatcgagccatgaaaaagattcaacaaaagacagaaacaaatccac 44

            
Query: 152 t 152
           |
Sbjct: 43  t 43


>gi|268519654|gb|FM888121.1|FM888121 FM888121 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001455,
           mRNA sequence
          Length = 615

 Score =  192 bits (97), Expect = 7e-50
 Identities = 115/121 (95%)
 Strand = Plus / Plus

                                                                       
Query: 32  gtaatcgattagttaacacgttgattaactgtattctgaaacatggacaaaaatcattgg 91
           |||||||||||||||||| |||| ||||| ||||||||||||| ||| ||||||||||||
Sbjct: 159 gtaatcgattagttaacatgttggttaaccgtattctgaaacacggaaaaaaatcattgg 218

                                                                       
Query: 92  cttatcaaattatctatcgagccatgaaaaagattcaacaaaagacataaacaaatccac 151
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 219 cttatcaaattatctatcgagccatgaaaaagattcaacaaaagacagaaacaaatccac 278

            
Query: 152 t 152
           |
Sbjct: 279 t 279


>gi|268519210|gb|FM887677.1|FM887677 FM887677 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000922,
           mRNA sequence
          Length = 565

 Score =  178 bits (90), Expect = 1e-45
 Identities = 115/122 (94%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                       
Query: 32  gtaatcgattagttaacacgttgattaactgtattctgaaacatggacaaaaatcattgg 91
           |||||||||||||||||| |||| ||||| ||||||||||||| ||| ||||||||||||
Sbjct: 127 gtaatcgattagttaacatgttggttaaccgtattctgaaacacggaaaaaaatcattgg 68

                                                                       
Query: 92  cttatcaaattatctatcga-gccatgaaaaagattcaacaaaagacataaacaaatcca 150
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 67  cttatcaaattatctatcgaggccatgaaaaagattcaacaaaagacagaaacaaatcca 8

             
Query: 151 ct 152
           ||
Sbjct: 7   ct 6