Jatropha Genome Database

JcCB0235721.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0235721.10 - phase: 0 /partial
         (1590 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520235|gb|FM890083.1|FM890083 FM890083 Jatropha curcas emb...   345   1e-94

>gi|268520235|gb|FM890083.1|FM890083 FM890083 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003875,
            mRNA sequence
          Length = 478

 Score =  345 bits (174), Expect = 1e-94
 Identities = 174/174 (100%)
 Strand = Plus / Plus

                                                                        
Query: 946  tctcagtctggcatagctgggatgtcaggagccagacagatccaaccaggttctgctagt 1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tctcagtctggcatagctgggatgtcaggagccagacagatccaaccaggttctgctagt 60

                                                                        
Query: 1006 ctttccatgctgggccaatctctgaaccgagctaacatgaatccaatgcaacgaagtgca 1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ctttccatgctgggccaatctctgaaccgagctaacatgaatccaatgcaacgaagtgca 120

                                                                  
Query: 1066 ataggcccaatgggtccaccaaaattgatggcaggggtgaacctttatgtgaac 1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  ataggcccaatgggtccaccaaaattgatggcaggggtgaacctttatgtgaac 174



 Score =  293 bits (148), Expect = 3e-79
 Identities = 148/148 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1276 gatccatcctcatcactgcaggctgttgtttcacctccacaagtaggttcaccatcaacc 1335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331  gatccatcctcatcactgcaggctgttgtttcacctccacaagtaggttcaccatcaacc 390

                                                                        
Query: 1336 atggttattccacaactgaatcaacaagcacaacagcagccccagcaacagcctagtcca 1395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391  atggttattccacaactgaatcaacaagcacaacagcagccccagcaacagcctagtcca 450

                                        
Query: 1396 cagcaaatgagccagcgaacacccatga 1423
            ||||||||||||||||||||||||||||
Sbjct: 451  cagcaaatgagccagcgaacacccatga 478