Jatropha Genome Database

JcCB0224701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0224701.10 + phase: 2 /partial
         (672 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680745|gb|GO246957.1|GO246957 JcrME_RL0501 Expressed seque...   617   e-177

>gi|237680745|gb|GO246957.1|GO246957 JcrME_RL0501 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 417

 Score =  617 bits (311), Expect = e-177
 Identities = 404/424 (95%), Gaps = 12/424 (2%)
 Strand = Plus / Plus

                                                                       
Query: 33  gcacaataacagagctttctctgcaaaataactcaacggcaatggccactcacttgtaca 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   gcacaataacagagctttctctgcaaaataactcaacggcaatggccactcacttgtaca 61

                                                                       
Query: 93  cctcttattctccaatcactaccaacaccatctccgctagcaacaacaacaataagatta 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  cctcttattctccaatcactaccaacaccatctccgctagcaacaacaacaataagatta 121

                                                                       
Query: 153 tttctattcctttactgtctagacatggtaaagcaatagcctcgcctctttctctcagaa 212
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 122 tttctattcctttactgtctagacatgg-aaagcaatagcctcgcctctttctctcagaa 180

                                                                       
Query: 213 gaactacctcactttccatatcggcagttgcaggaaccactgttgtgcaggtcgatgcac 272
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 181 gaactacctcactttccatatcggcagttgcaggaaccactgatgagcaggtcgatggac 240

                                                                       
Query: 273 tcgcaacctccagtaaagggccaaagtctttgccttttagagtgggtcatgggttcgatc 332
            ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 241 ccgcaacctccag--aaggg-caaagtctttgccttttagagtgggtcatgggttc-atc 296

                                                                       
Query: 333 ttcatcggctagagcctggttaccctttgatcattggtgggattaatgttccgcacgata 392
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||   |||||
Sbjct: 297 ttcatcggctagagcctggttaccctttgatcattgg-gggattaatgtccc---cgata 352

                                                                       
Query: 393 gaggctgcgaagctcactctgatggagatgtgttattgcactgtgttgtggatgcaatat 452
            ||||||| || |||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct: 353 -aggctgcaaacctcactctgatggagatg-gttattgcactg-gttggggatgcaatat 409

               
Query: 453 tggg 456
           ||||
Sbjct: 410 tggg 413