Jatropha Genome Database

JcCB0207431.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0207431.30 - phase: 1 /pseudo/partial
         (308 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518762|gb|FM889005.1|FM889005 FM889005 Jatropha curcas emb...   280   9e-76

>gi|268518762|gb|FM889005.1|FM889005 FM889005 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002555,
           mRNA sequence
          Length = 507

 Score =  280 bits (141), Expect = 9e-76
 Identities = 147/149 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgattcaaacggagcaactttgcattatgatcgactcagtttatcccccaatgggaa 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 329 tcatgattcaaacggagcaactttgcatcatgatcgactcagtttatcccccaatgggaa 388

                                                                       
Query: 61  gatactggcagcaacccacggctcaacattgcagtggttatgcgtggaaaccggaaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gatactggcagcaacccacggctcaacattgcagtggttatgcgtggaaaccggaaatgt 448

                                        
Query: 121 tctagacacagctgaaaaagcccatgacg 149
            ||||||||||||||||||||||||||||
Sbjct: 449 actagacacagctgaaaaagcccatgacg 477



 Score = 54.0 bits (27), Expect = 9e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 180 ggtgaaatcacatggatggcatgggcgccta 210
           ||||| |||||||||||||||||||||||||
Sbjct: 477 ggtgagatcacatggatggcatgggcgccta 507