Jatropha Genome Database

JcCB0203531.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0203531.10 + phase: 0 /partial
         (444 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521396|gb|FM894148.1|FM894148 FM894148 Jatropha curcas emb...   147   1e-35
gi|268519189|gb|FM887656.1|FM887656 FM887656 Jatropha curcas emb...    96   4e-20

>gi|268521396|gb|FM894148.1|FM894148 FM894148 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004336,
           mRNA sequence
          Length = 557

 Score =  147 bits (74), Expect = 1e-35
 Identities = 87/90 (96%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                       
Query: 356 aagaaattgaggcccaaatagacgaggtggtagtggtcagagagcaagctgagcccactt 415
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 557 aagaaattgaggcccaaatagacgaggtggtaggggtcagagagcaagctgagcccactt 498

                                         
Query: 416 tactgcaaga-acctatagcatctgagcat 444
           |||||||||| ||||||||||| |||||||
Sbjct: 497 tactgcaagagacctatagcatttgagcat 468


>gi|268519189|gb|FM887656.1|FM887656 FM887656 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000894,
           mRNA sequence
          Length = 532

 Score = 95.6 bits (48), Expect = 4e-20
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 397 gagcaagctgagcccactttactgcaagaacctatagcatctgagcat 444
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gagcaagctgagcccactttactgcaagaacctatagcatctgagcat 470