Jatropha Genome Database

JcCB0201851.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0201851.20 + phase: 0 
         (1335 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas emb...   256   6e-68

>gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004251,
           mRNA sequence
          Length = 525

 Score =  256 bits (129), Expect = 6e-68
 Identities = 309/378 (81%), Gaps = 1/378 (0%)
 Strand = Plus / Plus

                                                                       
Query: 217 ctttttagtgctaaaagagttcaatcgtttcaatcca-ttagagaagaagaagtgggtct 275
           ||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||
Sbjct: 1   ctttttagtgctaaaagagctcaatcgtttcaatcctgttagagaagaagaagtgggtct 60

                                                                       
Query: 276 tttaatcgattctattttaaaagnnnnnnnnnnnnnnnnncctgtgaatcttagtgaaat 335
           ||| || ||||| |||||||||                  |||||| |||||||||||| 
Sbjct: 61  tttcatagattcgattttaaaatcttcttcttcttcttctcctgtggatcttagtgaaaa 120

                                                                       
Query: 336 gactttggctcttactgcaaatattacttgtagagaagcttttgggaaaagttttgaagc 395
            | | || |||||||||||||| |||||||||||| |||||||||||| ||||||| | |
Sbjct: 121 aattatgtctcttactgcaaatgttacttgtagagtagcttttgggaatagttttgcaac 180

                                                                       
Query: 396 aagaggatttagccaggagagatttcaagaagtgattcatgaaggctttgccatgttggg 455
           ||||||||||| |||||| || ||||||||||||||||||||||  || |||| ||| ||
Sbjct: 181 aagaggatttacccaggaaaggtttcaagaagtgattcatgaagctttagccaagttagg 240

                                                                       
Query: 456 gagtttttctgcagctgannnnnnnccttatgtgggttggattgttgataggcttacagg 515
           | ||||||||||| ||||       ||||||||||||||||||||||||||| |||||||
Sbjct: 241 gggtttttctgcatctgacttttttccttatgtgggttggattgttgatagggttacagg 300

                                                                       
Query: 516 tctccatgcaagacttgnnnnnnnctttcaagaatttgatgagttctaccaaaagattat 575
           ||||||| ||| ||| |       |||||||||| ||||||| ||| |||| ||||||||
Sbjct: 301 tctccattcaaaactggaaagaagctttcaagaacttgatgaattccaccagaagattat 360

                             
Query: 576 cgatgatcatatccaaaa 593
            || ||||||||||||||
Sbjct: 361 tgaggatcatatccaaaa 378