Jatropha Genome Database

JcCB0201851.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0201851.10 - phase: 0 /TE/partial
         (969 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas emb...   115   1e-25

>gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002630,
           mRNA sequence
          Length = 509

 Score =  115 bits (58), Expect = 1e-25
 Identities = 121/142 (85%), Gaps = 5/142 (3%)
 Strand = Plus / Minus

                                                                       
Query: 22  atgatcagtctaaatggcgcaaagtaccatatatggagaaataaaatgagagatctcctt 81
           ||||||| |||||||||||  || |||||||||||||||||| | ||     ||||||||
Sbjct: 509 atgatcaatctaaatggcgggaattaccatatatggagaaattatat-----atctcctt 455

                                                                       
Query: 82  atggtaaccaaaatgcatttgcccgtgtttggttcaagcaaactggaagacaagactgat 141
           ||||||  ||||||| ||||||| |||||| ||||||  |||| ||||||||||||||||
Sbjct: 454 atggtactcaaaatgtatttgcctgtgtttagttcaactaaaccggaagacaagactgat 395

                                 
Query: 142 gaagaatgggctttcgagcatg 163
           || |||| ||||||||||||||
Sbjct: 394 gaggaataggctttcgagcatg 373