Jatropha Genome Database

JcCB0200451.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0200451.10 - phase: 0 
         (1116 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524108|gb|FM894787.1|FM894787 FM894787 Jatropha curcas emb...   999   0.0  

>gi|268524108|gb|FM894787.1|FM894787 FM894787 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000656,
           mRNA sequence
          Length = 552

 Score =  999 bits (504), Expect = 0.0
 Identities = 552/571 (96%), Gaps = 19/571 (3%)
 Strand = Plus / Plus

                                                                       
Query: 357 ctactttgataggtttatttcaactttaaagtttccaagagataagccttggatgggcca 416
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1   ctactttgataggtttatttcaactttaaagtttccaagagataagcct-ggatgggcca 59

                                                                       
Query: 417 acttgctgcagtcgcttgtttgtctctggctgctaaagtggaggaaacccaagtgcctct 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  acttgctgcagtcgcttgtttgtctctggctgctaaagtggaggaaacccaagtgcctct 119

                                                                       
Query: 477 tcttctggacttgcaagtggaggaatcaaaatatgtttttgaagctaagactatgaagag 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tcttctggacttgcaagtggaggaatcaaaatatgtttttgaagctaagactatgaagag 179

                                                                       
Query: 537 aatggagcttctggtgctctctactcttcaatggaggatgaatcctgtgactccaatttc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aatggagcttctggtgctctctactcttcaatggaggatgaatcctgtgactccaatttc 239

                                                                       
Query: 597 tttctttgatcacattataaggaggcttggtctaaagaaccacttacattgggaattttt 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tttctttgatcacattataaggaggcttggtctaaagaaccacttacattgggaattttt 299

                                                                       
Query: 657 gaggaggtgtgagcgtttacttctctctgtcatcgctgattcaagattcacgagttatct 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gaggaggtgtgagcgtttacttctctctgtcatcgctgattcaagattcacgagttatct 359

                                                                       
Query: 717 tccttctatatttgctactgcaattatgttgcatgttattaaggaggttgaggcatgtaa 776
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tccttctatatttgctactgcaattatgttgcatgttattaaggaggttgaggcatgtaa 419

                                                                       
Query: 777 tcaagtggaataccagaatcagcttatggctgtgatcaaaattagtgagtctactatatt 836
           |||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct: 420 tcaagtggaataccagaatcagcttatggctgtgatcaaaattagtg------------- 466

                                                                       
Query: 837 gcaacaggacaaagtcaaagagtgttacaagcacattttggagctatcaggcagccagaa 896
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 -----aggacaaagtcaaagagtgttacaagcacattttggagctatcaggcagccagaa 521

                                          
Query: 897 ttcaagtagtaagcgcaaacattcatggata 927
           |||||||||||||||||||||||||||||||
Sbjct: 522 ttcaagtagtaagcgcaaacattcatggata 552