Jatropha Genome Database

JcCB0193291.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0193291.10 - phase: 1 /pseudo/partial
         (657 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262090859|gb|GT229217.1|GT229217 JC782 Jatropha seeds from fr...   670   0.0  

>gi|262090859|gb|GT229217.1|GT229217 JC782 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL19SE.B07.scf 5', mRNA sequence
          Length = 666

 Score =  670 bits (338), Expect = 0.0
 Identities = 522/578 (90%), Gaps = 4/578 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgcagctaaaccggtggcaacaggctgcagtttgctttttggttcagcaattggtgcat 60
           ||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||
Sbjct: 74  gtgcagctaaaccggtggcaacaggctgcagtt-gcattt-ggttcagcgattggtgcat 131

                                                                       
Query: 61  tggtagacccaagaagagcagattttatagcagctcttggagaaacgactggtaagcctg 120
           || | |||||||||||||||||||  |||||||||||||||||||| |||||||||||||
Sbjct: 132 tgttggacccaagaagagcagatta-atagcagctcttggagaaacaactggtaagcctg 190

                                                                       
Query: 121 cttttgaaaaagttcttcagaggatgaagaggagcccagaaggcagggctgtagtcttgg 180
           | |||||||  |||||| |||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 191 cgtttgaaagggttcttgagaggatgaagaggagcccagaaggcagagcagtactcttgg 250

                                                                       
Query: 181 agagaccgcatgtgatttctgcagaagttcgacacgcatgggatttgccagaaaacacat 240
            |||||| | ||| || ||||||||||||   || |||||||||||||||||||||||||
Sbjct: 251 ggagaccacgtgtcatatctgcagaagttgcgcatgcatgggatttgccagaaaacacat 310

                                                                       
Query: 241 atggtgctgcctatgcaagattcatgggatctacgaacttttccccagacgatcgtccac 300
            |||||||||||||||||||||||||||||| | ||||||||||||||| || || || |
Sbjct: 311 ttggtgctgcctatgcaagattcatgggatccaggaacttttccccagatgaccgccccc 370

                                                                       
Query: 301 cagtgcggttcatggacacagatgaactggcatatgtagctttgagagctcgtgaaccgc 360
           |||||||||||||||||||||||||||| |||||||| ||  |||||||||| |||  ||
Sbjct: 371 cagtgcggttcatggacacagatgaactagcatatgtggccatgagagctcgcgaagtgc 430

                                                                       
Query: 361 aagacttctggcacacccttttcgaccttcccaccaacctaatctgtgaatcagcactca 420
           | ||||||||||||||| | || | ||||||||||||||||||  ||||||| || ||||
Sbjct: 431 atgacttctggcacaccttatttggccttcccaccaacctaattggtgaatcggcgctca 490

                                                                       
Query: 421 aggtgataagagtttgagcaaatgtatctgccaatgtgtctaatgtctgtggtaggtgcc 480
           ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 491 aggtgat-agagtttgagcaaatgtatcttccaatgtgtctaatgtctgtggtaggtggc 549

                                                                       
Query: 481 acagcaagatttagtgagaagcagaggagtttgttcttccatcactacttcccatgggct 540
           ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||
Sbjct: 550 acagcaagatttagtgagaagcagaggagattgttcttcaatcactacttgccatgggct 609

                                                 
Query: 541 gtccaagcaggaatgcagtgcacagatctcatgtgtgt 578
           |||| |||||||||||||||||| ||||||||||||||
Sbjct: 610 gtccgagcaggaatgcagtgcacggatctcatgtgtgt 647