Jatropha Genome Database
- JcCB0191441.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0191441.10 + phase: 0
(456 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680558|gb|GO246770.1|GO246770 JcrME_RL0314 Expressed seque... 513 e-146
gi|268525960|gb|FM891216.1|FM891216 FM891216 Jatropha curcas emb... 504 e-143
gi|268524451|gb|FM895131.1|FM895131 FM895131 Jatropha curcas emb... 357 7e-99
gi|268525345|gb|FM895987.1|FM895987 FM895987 Jatropha curcas emb... 224 7e-59
gi|268523601|gb|FM892134.1|FM892134 FM892134 Jatropha curcas emb... 178 4e-45
gi|268518226|gb|FM888500.1|FM888500 FM888500 Jatropha curcas emb... 133 2e-31
gi|268519988|gb|FM889836.1|FM889836 FM889836 Jatropha curcas emb... 123 2e-28
>gi|237680558|gb|GO246770.1|GO246770 JcrME_RL0314 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 400
Score = 513 bits (259), Expect = e-146
Identities = 259/259 (100%)
Strand = Plus / Plus
Query: 198 cactggaaacaagattttgcgcatccttaaggctcatggtcttgcccctgaaattcctga 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cactggaaacaagattttgcgcatccttaaggctcatggtcttgcccctgaaattcctga 65
Query: 258 ggatttgtatcatctcatcaagaaggctgttgcaattaggaagcatttggagaggaacag 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ggatttgtatcatctcatcaagaaggctgttgcaattaggaagcatttggagaggaacag 125
Query: 318 aaaagataaggattccaagttcaggttgatccttgtagagagccggattcacaggcttgc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 aaaagataaggattccaagttcaggttgatccttgtagagagccggattcacaggcttgc 185
Query: 378 tcgatactacaagaaaacgaagaagctacctcctgtttggaaatacgagtcaaccactgc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tcgatactacaagaaaacgaagaagctacctcctgtttggaaatacgagtcaaccactgc 245
Query: 438 tagcacacttgtggcctag 456
|||||||||||||||||||
Sbjct: 246 tagcacacttgtggcctag 264
>gi|268525960|gb|FM891216.1|FM891216 FM891216 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001338,
mRNA sequence
Length = 472
Score = 504 bits (254), Expect = e-143
Identities = 304/314 (96%), Gaps = 5/314 (1%)
Strand = Plus / Minus
Query: 143 ctcagattggtgtcattcttcgtgattctcatggtattgctcaggtgaggagtgtcactg 202
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 472 ctcagattggtgtcattcgtcgtgattctcatggtattgctcagttgaggagtgtcactg 413
Query: 203 gaaacaagattttgcgcatccttaaggctcatggtcttgcccctgaaattcctgaggatt 262
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 412 gatacaagattttgcgcatccttaaggctcatggtcttgctcctgaaattcctgaggatt 353
Query: 263 tgtatcatctcatcaagaaggctgttgcaattaggaagcatttggagaggaacagaaaag 322
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 352 tg-gtcatctcatcaagaaggctgttgcaattaggaagca-ttggagaggaacagaaaag 295
Query: 323 ataaggattccaagttcaggttgatccttgtagagagccggattcacaggcttgctcgat 382
||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct: 294 ataaggattccaagttcaggttgatcc-tgtagagagccggattcac-ggc-tgctcgat 238
Query: 383 actacaagaaaacgaagaagctacctcctgtttggaaatacgagtcaaccactgctagca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 actacaagaaaacgaagaagctacctcctgtttggaaatacgagtcaaccactgctagca 178
Query: 443 cacttgtggcctag 456
||||||||||||||
Sbjct: 177 cacttgtggcctag 164
>gi|268524451|gb|FM895131.1|FM895131 FM895131 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001909,
mRNA sequence
Length = 669
Score = 357 bits (180), Expect = 7e-99
Identities = 384/452 (84%)
Strand = Plus / Plus
Query: 1 atgggtcgtatgcacagtcgcggtaagggtatttctgcttcggctctgccttacaagagg 60
|||||||| ||||||||||| |||||||||||||| ||||| ||| ||||||| ||||||
Sbjct: 39 atgggtcgcatgcacagtcgaggtaagggtatttcagcttccgctttgccttataagagg 98
Query: 61 actcccccaagctggctcaagatctctgctcaggatgttgaggataacatttgcaaattt 120
|| || || || ||||| ||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 99 acaccgcccagttggctgaagatatctgctcaggatgtcgaggataacatctgcaaattt 158
Query: 121 gcgaagaaggggcttactccttctcagattggtgtcattcttcgtgattctcatggtatt 180
|| ||||| || | ||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 159 gcaaagaaaggcttgactccatctcaaattggtgtcatccttcgtgattctcatggtatt 218
Query: 181 gctcaggtgaggagtgtcactggaaacaagattttgcgcatccttaaggctcatggtctt 240
|| || ||||||||||| ||||| |||||||||||||| || | ||||| ||||| |||
Sbjct: 219 gcccaagtgaggagtgttactggtaacaagattttgcggatattgaaggcacatgggctt 278
Query: 241 gcccctgaaattcctgaggatttgtatcatctcatcaagaaggctgttgcaattaggaag 300
|| |||||||| ||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 279 gctcctgaaatacctgaagatttgtaccacctcatcaagaaagcagttgccattaggaaa 338
Query: 301 catttggagaggaacagaaaagataaggattccaagttcaggttgatccttgtagagagc 360
||||||||||||||||| || ||||| |||||||| || |||||||| | || ||||||
Sbjct: 339 catttggagaggaacaggaaggataaagattccaaatttaggttgattttggttgagagc 398
Query: 361 cggattcacaggcttgctcgatactacaagaaaacgaagaagctacctcctgtttggaaa 420
|||| ||| | || ||||| || |||||||| || |||||||| || || || ||||||
Sbjct: 399 aggatccaccgcctagctcgctattacaagaagacaaagaagcttccaccagtatggaaa 458
Query: 421 tacgagtcaaccactgctagcacacttgtggc 452
|| || ||||| ||||| ||||| ||||||||
Sbjct: 459 tatgaatcaactactgccagcacccttgtggc 490
>gi|268525345|gb|FM895987.1|FM895987 FM895987 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003110,
mRNA sequence
Length = 591
Score = 224 bits (113), Expect = 7e-59
Identities = 257/305 (84%)
Strand = Plus / Minus
Query: 148 attggtgtcattcttcgtgattctcatggtattgctcaggtgaggagtgtcactggaaac 207
||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 559 attggtgtcatccttcgtgattctcatggtattgcccaagtgaggagtgttactggtaac 500
Query: 208 aagattttgcgcatccttaaggctcatggtcttgcccctgaaattcctgaggatttgtat 267
||||||||||| || | ||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 499 aagattttgcggatattgaaggcacatgggcttgctcctgaaatacctgaagatttgtac 440
Query: 268 catctcatcaagaaggctgttgcaattaggaagcatttggagaggaacagaaaagataag 327
|| ||||||||||| || ||||| |||||||| ||||||||||||||||| || |||||
Sbjct: 439 cacctcatcaagaaagcagttgccattaggaaacatttggagaggaacaggaaggataaa 380
Query: 328 gattccaagttcaggttgatccttgtagagagccggattcacaggcttgctcgatactac 387
|||||||| || |||||||| | || |||||| |||| ||| | || ||||| || |||
Sbjct: 379 gattccaaatttaggttgattttggttgagagcaggatccaccgcctagctcgctattac 320
Query: 388 aagaaaacgaagaagctacctcctgtttggaaatacgagtcaaccactgctagcacactt 447
||||| || |||||||| || || || |||||||| || ||||| ||||| ||||| ||
Sbjct: 319 aagaagacaaagaagcttccaccagtatggaaatatgaatcaactactgccagcaccctc 260
Query: 448 gtggc 452
|||||
Sbjct: 259 gtggc 255
>gi|268523601|gb|FM892134.1|FM892134 FM892134 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002623,
mRNA sequence
Length = 434
Score = 178 bits (90), Expect = 4e-45
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 250 attcctgaggatttgtatcatctcatcaagaaggctgttgcaattaggaagcatttggag 309
||||| || |||||||| ||| | ||||||||||| ||||| ||| | ||||||||||||
Sbjct: 51 attccagaagatttgtaccatttgatcaagaaggcagttgcgattcgcaagcatttggag 110
Query: 310 aggaacagaaaagataaggattccaagttcaggttgatccttgtagagagccggattcac 369
|||||||| || |||||||||||||||||||||||||| | || || || |||| |||
Sbjct: 111 aggaacaggaaggataaggattccaagttcaggttgattttggtggaaagtaggatccac 170
Query: 370 aggcttgctcgatactacaagaaaacgaagaagctacctcctgtttggaaatacgagtca 429
||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 171 aggctcgctcgctactacaagaaaaccaagaagctccctcctgtttggaaatacgagtca 230
Query: 430 ac 431
||
Sbjct: 231 ac 232
>gi|268518226|gb|FM888500.1|FM888500 FM888500 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001926,
mRNA sequence
Length = 384
Score = 133 bits (67), Expect = 2e-31
Identities = 88/91 (96%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 366 tcacaggcttgctcgatactacaagaaaacgaagaagctacctcctgtttggaaatacga 425
||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 5 tcacaggct-gctcgatactacaagaaa-cgaagaa-ctacctcctgtttggaaatacga 61
Query: 426 gtcaaccactgctagcacacttgtggcctag 456
|||||||||||||||||||||||||||||||
Sbjct: 62 gtcaaccactgctagcacacttgtggcctag 92
>gi|268519988|gb|FM889836.1|FM889836 FM889836 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003574,
mRNA sequence
Length = 361
Score = 123 bits (62), Expect = 2e-28
Identities = 161/194 (82%)
Strand = Plus / Plus
Query: 259 gatttgtatcatctcatcaagaaggctgttgcaattaggaagcatttggagaggaacaga 318
|||||||| || ||||||||||| || ||||| |||||||| |||||||||||||||||
Sbjct: 16 gatttgtaccacctcatcaagaaagcagttgccattaggaaacatttggagaggaacagg 75
Query: 319 aaagataaggattccaagttcaggttgatccttgtagagagccggattcacaggcttgct 378
|| ||||| |||||||| || |||||||| | || |||||| |||| ||| | || |||
Sbjct: 76 aaggataaagattccaaatttaggttgattttggttgagagcaggatccaccgcctagct 135
Query: 379 cgatactacaagaaaacgaagaagctacctcctgtttggaaatacgagtcaaccactgct 438
|| || |||||||| || |||||||| || || || |||||||| || ||||| |||||
Sbjct: 136 cgctattacaagaagacaaagaagcttccaccagtatggaaatatgaatcaactactgcc 195
Query: 439 agcacacttgtggc 452
||||| ||||||||
Sbjct: 196 agcacccttgtggc 209