Jatropha Genome Database

JcCB0186461.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0186461.10 + phase: 0 /pseudo
         (1536 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520143|gb|FM889991.1|FM889991 FM889991 Jatropha curcas emb...  1039   0.0  

>gi|268520143|gb|FM889991.1|FM889991 FM889991 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003760,
            mRNA sequence
          Length = 550

 Score = 1039 bits (524), Expect = 0.0
 Identities = 548/552 (99%), Gaps = 3/552 (0%)
 Strand = Plus / Plus

                                                                        
Query: 728  gtaagttgcatgaaatctttgctaactttgaagaagaacctgtagcatctggaagtgttg 787
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gtaagttgcatgaaatctttgctaactttgaagaagaacctgtagcatctggaagtgttg 60

                                                                        
Query: 788  ctcaagttcatcgagcgactttaaaatatagataccctggtaaggagattgaacccatta 847
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ctcaagttcatcgagcgactttaaaatatagataccctggtaaggagattgaacccatta 120

                                                                        
Query: 848  tagttgctgtaaaggttcgacatccaagtgt-gcagaagcaattagaagggactttgtat 906
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 121  tagttgctgtaaaggttcgacatccaagtgttgcagaagcaattagaagggactttgtat 180

                                                                        
Query: 907  taataaattttgtagtccaaaatttcaaagcttataccaacactaaaatggtcaagatta 966
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  taataaattttgtag-ccaaaatttcaaagcttataccaacactaaaatggtcaagatta 239

                                                                        
Query: 967  gaggaaagtatacaacaatttgcggttttcatgatatctcaagttgatctggcaagagaa 1026
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240  gaggaaagtatacaacaatttgcggttttcatgatatctcaagttgatctggcaagagaa 299

                                                                        
Query: 1027 gcagcccatttgagtcgtttcatctataatttccggaaatggaaggatgtctctttccca 1086
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300  gcagcccatttgagtcgtttcatctataatttccggaaatggaaggatgtctctttccca 359

                                                                        
Query: 1087 aggcctctatatcccctggtgcacccagctgttcttgtggaaacctatgaacaaggcaaa 1146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360  aggcctctatatcccctggtgcacccagctgttcttgtggaaacctatgaacaaggcaaa 419

                                                                        
Query: 1147 agcgtcctgcactatgttgatgaacttgatggagacaaaagaataagaagtgcccttgca 1206
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420  agcgtcctgcactatcttgatgaacttgatggagacaaaagaataagaagtgcccttgca 479

                                                                        
Query: 1207 catattggaacacaagcacttttaaagatgcttttgatagataattttatccatgcagac 1266
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 480  catattggaacacaagcacttttaaagatgcttttgatagataa-tttatccatgcagac 538

                        
Query: 1267 atgcatcctgga 1278
            ||||||||||||
Sbjct: 539  atgcatcctgga 550