Jatropha Genome Database
- JcCB0180631.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0180631.10 - phase: 1 /TE
(2005 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas emb... 505 e-143
gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas emb... 394 e-109
gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas emb... 303 4e-82
gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas emb... 224 3e-58
>gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003537,
mRNA sequence
Length = 557
Score = 505 bits (255), Expect = e-143
Identities = 364/398 (91%), Gaps = 3/398 (0%)
Strand = Plus / Plus
Query: 608 caactgaacagtttggctgagaggatgaacagaactttgatggagagagtcagatgttta 667
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 158 caactgaacaatttggctgagaggatgaacagaactttgatggagagagtcagatgtgta 217
Query: 668 ctctcacatgcaaagttgtctaaaagattt-ggggtgaagcgttactcacaacagtttgc 726
||||||||||||||||||||||| |||||| ||||| |||| ||||| ||| |||||
Sbjct: 218 ctctcacatgcaaagttgtctaagagattttggggtaaagctttacttacagtagtttat 277
Query: 727 cgttcactctgtttccctctacagtatgatactccagag--agagtatggttaggaaagg 784
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 278 cgttcaccctgtttccctctacagtatgatactccagagagagagtatggttaggaaatg 337
Query: 785 atgtttcctatgatcatttgcaggtgtttgattgcaaagccttcgtacatgtcccgaagg 844
|||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct: 338 atgtatcctatgatcatttgcgggtgtttgattgtaaagccttcgtacatgtcctgaagg 397
Query: 845 atgaacgggcgaagcttgatgtcaagactagacagtgtgtattcattggctatggccaag 904
|||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| ||
Sbjct: 398 atgaacggtcgaagcttgatgttcagactagacagtgtgtattcattggttatggcccag 457
Query: 905 accaatgtgactataggttttatgacccaatccagaagacgattatatgaaatcgtgatg 964
|||||| || ||||| ||||||||||||||||| ||||| |||||| |||||||||| |
Sbjct: 458 accaatttggctataagttttatgacccaatcccaaagacaattataagaaatcgtgaag 517
Query: 965 ctgtatttgttgaaaatcagactattgaagatattgaa 1002
|||||||||||||||| ||||||||||||||||||||
Sbjct: 518 ttgtatttgttgaaaattagactattgaagatattgaa 555
>gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002630,
mRNA sequence
Length = 509
Score = 394 bits (199), Expect = e-109
Identities = 344/383 (89%), Gaps = 12/383 (3%)
Strand = Plus / Minus
Query: 1 catgcgtccaaatctcggttggtaga-tttgatgatgaatgtttctatagcaccttcaga 59
||||||||||||||||| |||| ||| |||||||||||| |||||| |||||||||| |
Sbjct: 376 catgcgtccaaatctcgtttggcagactttgatgatgaaggtttctgtagcaccttctaa 317
Query: 60 aatggtcagtggaagctcacaaaaggttcatttgtgttagctaaagaccgaaaagttgta 119
||||||||||||||||||| ||||||||||||||| ||||| ||||| |||| | ||||
Sbjct: 316 catggtcagtggaagctcaccaaaggttcatttgtggtagctgaagactgaaa-gatgta 258
Query: 120 cgtgatgcatgtgaaactctcacaagacactttgagtgtag-cggagaatgacagtacag 178
||||||||||| | |||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct: 257 cgtgatgcatgcgtaactcttccaagacactttgagtgtagtcagagaatgacagtacag 198
Query: 179 ttgaattatggcataaatggttacgccacatgagtaagaaaactctcgcaagaaagaaca 238
||||||| |||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct: 197 ttgaattgtggcatt--tgactacgccacatgagtaagaaaactctggcaagaaagaacg 140
Query: 239 tactacctggattggatgaagttcacctagaaaagtgtcctgattgtatggcgggaaagc 298
||||||||||||||||||||||||||||||| |||| ||||||||| |||||| ||||||
Sbjct: 139 tactacctggattggatgaagttcacctagacaagtatcctgattggatggcgagaaagc 80
Query: 299 taaacag-agtagctttcaagattacccctccttctagaatgaagaat-gtattaaatct 356
||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 79 taaacagcagtagctttcaagattac----ccttctagaatgaagaatcgtattaaatct 24
Query: 357 gattcattcagat-ttgtgtgga 378
||||||||||||| |||||||||
Sbjct: 23 gattcattcagatcttgtgtgga 1
>gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587,
mRNA sequence
Length = 563
Score = 303 bits (153), Expect = 4e-82
Identities = 372/444 (83%), Gaps = 12/444 (2%)
Strand = Plus / Plus
Query: 468 ttctaaacctggttgagagacagacaggtaagaagctgaagtgtatcaggacaaataatg 527
|||||||| |||||||| |||| || || |||||||||||||| ||||| ||| ||||||
Sbjct: 120 ttctaaacttggttgagcgacaaacgggcaagaagctgaagtgcatcagaacagataatg 179
Query: 528 gtggagaatacactgggccatttgatgttttctacaaagagcatagcattcgacatcaaa 587
|||||||||||||||||||||||||| ||||| |||||||||| | |||||||||||||
Sbjct: 180 gtggagaatacactgggccatttgatactttctgcaaagagcatggtattcgacatcaaa 239
Query: 588 cgacacttcccaagacgcaacaactgaacagtttggctgagaggatgaacagaactttga 647
| |||| ||||||||||| |||||||| ||||||||||||||||||| ||||||| |
Sbjct: 240 caacacctcccaagacgccgcaactgaatggtttggctgagaggatgaatagaacttaaa 299
Query: 648 tggagagagtcagatgtttactctcacatgcaaagttgtctaaaagattt--ggggtgaa 705
||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct: 300 cggagagagtcagatgtttattctcacatgtaaagttgtctaaaagattttgggggtgaa 359
Query: 706 gcgttactcacaacagtt---------tgccgttcactctgtttccctctacagtatgat 756
|| | || ||| ||||| ||||||| ||| | ||||| |||||||||
Sbjct: 360 gctcttcttacagcagttcatcttataaatcgttcaccttgtgttcctcttcagtatgat 419
Query: 757 actccagagagagtatggttaggaaaggatgtttcctatgatcatttgcaggtgtttgat 816
| |||| | |||||||||| ||||||| |||||||||||||| | |||||||||| || |
Sbjct: 420 aatccacaaagagtatggtcaggaaagaatgtttcctatgattacttgcaggtgtatggt 479
Query: 817 tgcaaa-gccttcgtacatgtcccgaaggatgaacgggcgaagcttgatgtcaagactag 875
|||||| || || || ||| | || |||||||| || | |||||||||||||| ||| |
Sbjct: 480 tgcaaaggcatttgtgcatattcctaaggatgagaggtctaagcttgatgtcaaaactcg 539
Query: 876 acagtgtgtattcattggctatgg 899
||| ||||||||||||||||||||
Sbjct: 540 acaatgtgtattcattggctatgg 563
>gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001895,
mRNA sequence
Length = 495
Score = 224 bits (113), Expect = 3e-58
Identities = 147/157 (93%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 1790 tttttgctctatgtggttgatatggtgactgttggtcagaattctagcttgaagatacag 1849
||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct: 2 tttttgctctatgtggttgatatattgattgttggtcagaattctagcttgaagaaacag 61
Query: 1850 ctaagtaagtctttttc-atgaaagacttaggaccagcaaagcaaattcttggcatgaag 1908
||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 62 ctaagtaagtcttttgctatgaaagacttgggaccagcaaagcaaattcttggcataaag 121
Query: 1909 attgaagagccaagaaattatggttgtcacaggagaa 1945
|| |||||||||||||||||||||||||||||||||
Sbjct: 122 atcaaagagccaagaaattatggttgtcacaggagaa 158