Jatropha Genome Database

JcCB0175211.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0175211.10 - phase: 0 
         (1533 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed seque...    68   3e-11
gi|268518207|gb|FM888481.1|FM888481 FM888481 Jatropha curcas emb...    64   5e-10

>gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed sequence
            tags from Jatropha curcas root cDNA library Jatropha
            curcas cDNA, mRNA sequence
          Length = 700

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1384 ttgctatatcattttgattggaaacttcctaacggaatgcggccagaagatcttgacatg 1443
            |||||||||||||||||||||||||||||| |||| | |  |||||| |||||||| |||
Sbjct: 412  ttgctatatcattttgattggaaacttcctgacgggaagatgccagaggatcttgatatg 471

                  
Query: 1444 aatgaa 1449
            | ||||
Sbjct: 472  agtgaa 477


>gi|268518207|gb|FM888481.1|FM888481 FM888481 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001906,
            mRNA sequence
          Length = 272

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1336 cctggaatattattcggcatatctaatgttcaatttcctcttgcccgattgctatatcat 1395
            |||||||||| |||||||||  |||||||  || |||| ||||| |  || |||||||||
Sbjct: 15   cctggaatatcattcggcatggctaatgtcgaacttccacttgcacacttactatatcat 74

                            
Query: 1396 tttgattggaaacttc 1411
            ||||||||||||||||
Sbjct: 75   tttgattggaaacttc 90