Jatropha Genome Database

JcCB0175111.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0175111.20 - phase: 0 /partial
         (330 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524207|gb|FM894886.1|FM894886 FM894886 Jatropha curcas emb...   615   e-176
gi|268525426|gb|FM896068.1|FM896068 FM896068 Jatropha curcas emb...   525   e-150

>gi|268524207|gb|FM894886.1|FM894886 FM894886 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000779,
           mRNA sequence
          Length = 549

 Score =  615 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Minus

                                                                       
Query: 21  caggtttgatggagctgcaccagaacctcgaaagggaataaaaagtggtcacatacctgg 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 caggtttgatggagctgcaccagaacctcgaaagggaataaaaagtggtcacatacctgg 398

                                                                       
Query: 81  gagcaagtgcattccttttccccaaatgttggatgcttcacagacactcttaccagcgga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gagcaagtgcattccttttccccaaatgttggatgcttcacagacactcttaccagcgga 338

                                                                       
Query: 141 tgagcttaagaaacggtttgatcaagaaggcatctccttggaaagctctattgttacttc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgagcttaagaaacggtttgatcaagaaggcatctccttggaaagctctattgttacttc 278

                                                                       
Query: 201 ttgtgggactggcgtaactgcttgcattcttgctttgggtctgcatcgacttgggaagca 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgtgggactggcgtaactgcttgcattcttgctttgggtctgcatcgacttgggaagca 218

                                                                       
Query: 261 agatgttgcagtttatgatggatcctggactgaatggggtgcacatcctgacacacctgt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 agatgttgcagtttatgatggatcctggactgaatggggtgcacatcctgacacacctgt 158

                     
Query: 321 tgacacttcc 330
           ||||||||||
Sbjct: 157 tgacacttcc 148


>gi|268525426|gb|FM896068.1|FM896068 FM896068 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003206,
           mRNA sequence
          Length = 536

 Score =  525 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 21  caggtttgatggagctgcaccagaacctcgaaagggaataaaaagtggtcacatacctgg 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 caggtttgatggagctgcaccagaacctcgaaagggaataaaaagtggtcacatacctgg 315

                                                                       
Query: 81  gagcaagtgcattccttttccccaaatgttggatgcttcacagacactcttaccagcgga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gagcaagtgcattccttttccccaaatgttggatgcttcacagacactcttaccagcgga 375

                                                                       
Query: 141 tgagcttaagaaacggtttgatcaagaaggcatctccttggaaagctctattgttacttc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgagcttaagaaacggtttgatcaagaaggcatctccttggaaagctctattgttacttc 435

                                                                       
Query: 201 ttgtgggactggcgtaactgcttgcattcttgctttgggtctgcatcgacttgggaagca 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 436 ttgtgggactggcgtaactgcttgcattcttgctttgggtctgcatcgacttgggaagcc 495

                                                    
Query: 261 agatgttgcagtttatgatggatcctggactgaatggggtg 301
           |||||||||||||||||||||   |||||||||||||||||
Sbjct: 496 agatgttgcagtttatgatgggatctggactgaatggggtg 536