Jatropha Genome Database
- JcCB0171551.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0171551.10 + phase: 0 /pseudo/partial
(1188 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680306|gb|GO246518.1|GO246518 JcrME_RL0062 Expressed seque... 274 2e-73
gi|268524941|gb|FM895639.1|FM895639 FM895639 Jatropha curcas emb... 254 2e-67
gi|268525283|gb|FM895925.1|FM895925 FM895925 Jatropha curcas emb... 143 5e-34
gi|268524824|gb|FM895522.1|FM895522 FM895522 Jatropha curcas emb... 121 2e-27
gi|268526424|gb|FM895278.1|FM895278 FM895278 Jatropha curcas emb... 121 2e-27
>gi|237680306|gb|GO246518.1|GO246518 JcrME_RL0062 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 698
Score = 274 bits (138), Expect = 2e-73
Identities = 159/162 (98%), Gaps = 3/162 (1%)
Strand = Plus / Minus
Query: 897 tagacccatgtattcaaacccacccattcatggagcatctatagtggctttcatcctaaa 956
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 549 tagacccatgtattcaaacccacccat-catg-agcatctatagtggctttcatcctaaa 492
Query: 957 agataggaatttgtacaatgagtggaccattgagctgaaggcaatggctgaccgtattat 1016
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agatag-aatttgtacaatgagtggaccattgagctgaaggcaatggctgaccgtattat 433
Query: 1017 ctgcatgcgccagcagctatttgatgccttgcacgctagagg 1058
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctgcatgcgccagcagctatttgatgccttgcacgctagagg 391
>gi|268524941|gb|FM895639.1|FM895639 FM895639 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002593,
mRNA sequence
Length = 530
Score = 254 bits (128), Expect = 2e-67
Identities = 386/472 (81%)
Strand = Plus / Plus
Query: 356 gcttgtctggtactggttctttgagggttggagctgaatttttagccagacattatcacc 415
||||||||||||| ||||||||||| ||||||| || ||| | || || ||||| || |
Sbjct: 17 gcttgtctggtaccggttctttgagagttggaggggagtttcttgcaaggcattaccatc 76
Query: 416 aacgcatcatatacattccccagccaacttggggaaaccaccctaaagtttttactttgg 475
||| | ||||||||||| |||||||| |||||||| || | ||||| || ||| | |
Sbjct: 77 aactgacaatatacattccacagccaacatggggaaatcataccaaagtcttcactcttg 136
Query: 476 ctgggttatcagtaaaaacttaccggtattatgatcccacaacacgtggactgaacttcc 535
| ||||| || ||||| || |||||||| |||||||| |||||||||| ||| | ||||
Sbjct: 137 cagggttgtctgtaaagacgtaccggtactatgatccagcaacacgtgggctggatttcc 196
Query: 536 aaggcttgttggaagatcttgggtctgctccatcaggagctattgtacttcttcatgcat 595
|||||||| | || ||||| || ||||| ||| ||||| || | || ||||| |||||||
Sbjct: 197 aaggcttgctagaggatctgggatctgcaccaacaggatctgtagtgcttctccatgcat 256
Query: 596 gtgcccataaccccacaggtgttgatccaactttgcagcagtgggatcaaataaggcagc 655
|||| |||||||| || || ||||| ||||| | |||||||||| || || || ||||
Sbjct: 257 gtgcacataacccaactggcgttgacccaacccttgagcagtgggagcagatcagacagc 316
Query: 656 tgatgagatcaaaagggttgatgcctttctttgacagtgcctatcagggttttgcaagtg 715
|||| |||||||||| || ||||||||||||||||||| |||||||||||||| ||||
Sbjct: 317 tgatcagatcaaaagcatttttgcctttctttgacagtgcttatcagggttttgcgagtg 376
Query: 716 gaagcctggactctgatgcacaatctgttcgcatgtttgttgctgatggtggtgaacttc 775
| ||||| || | |||||||| ||||||| ||||||||| |||||||||||| ||
Sbjct: 377 gcagcctagatgcagatgcacagcctgttcggttgtttgttggagatggtggtgaatgtc 436
Query: 776 ttgtagctcaaagttatgcaaaaaacatggggctctacggggaacgtgttgg 827
||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 437 ttgtagcacagagttatgcaaaaaatatgggactctatggggaacgtgttgg 488
>gi|268525283|gb|FM895925.1|FM895925 FM895925 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002933,
mRNA sequence
Length = 545
Score = 143 bits (72), Expect = 5e-34
Identities = 342/432 (79%)
Strand = Plus / Plus
Query: 112 tataacaaagaccccagccctgttaagctgaacttgggagttggcgcttatcgaactgag 171
||||||||||| | |||||| ||| |||| ||||| ||||| |||||||||||||||
Sbjct: 102 tataacaaagatacaagccctaacaagttgaatttgggtgttggtgcttatcgaactgag 161
Query: 172 gaagggaaacctctggttctgaatgtagtgagaaaagctgagcagcagcttgttaatgac 231
|||||||| ||||| ||| ||||||| ||||| ||||| |||||| || || ||||||
Sbjct: 162 gaagggaagcctctcgttttgaatgtggtgaggaaagcggagcagatactagtaaatgac 221
Query: 232 aggtcacgcgtgaaggaatatcttcccattactgggctcgctgacttcaataaattgagt 291
||| || || || || |||||||| ||| ||| || ||||| || |||||| |||||
Sbjct: 222 cagtctcgggtcaaagagtatcttcctattgttggacttgctgattttaataaactgagt 281
Query: 292 gctaagcttatttttggtgctgacagcaatgctattcaagagaacagggttaccacagtt 351
|| |||||||| || || ||||| ||| ||||| ||||||||||| | || || ||
Sbjct: 282 gccaagcttatcttaggagctgatagccccgctatacaagagaacagaataactactgtg 341
Query: 352 cagtgcttgtctggtactggttctttgagggttggagctgaatttttagccagacattat 411
|| ||||||||||||| ||||||||||| ||||||| || ||| | || || |||||
Sbjct: 342 caaggcttgtctggtaccggttctttgagagttggaggggagtttcttgcaaggcattac 401
Query: 412 caccaacgcatcatatacattccccagccaacttggggaaaccaccctaaagtttttact 471
|| |||| | ||||||||||| |||||||| |||||||| || | ||||| || |||
Sbjct: 402 catcaactgacaatatacattccacagccaacatggggaaatcataccaaagtcttcact 461
Query: 472 ttggctgggttatcagtaaaaacttaccggtattatgatcccacaacacgtggactgaac 531
| || ||||| || ||||| || |||||||| |||||||| |||||||||| ||| |
Sbjct: 462 cttgcagggttgtctgtaaagacgtaccggtactatgatccagcaacacgtgggctggat 521
Query: 532 ttccaaggcttg 543
| ||||||||||
Sbjct: 522 tcccaaggcttg 533
>gi|268524824|gb|FM895522.1|FM895522 FM895522 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002459,
mRNA sequence
Length = 482
Score = 121 bits (61), Expect = 2e-27
Identities = 271/341 (79%)
Strand = Plus / Plus
Query: 112 tataacaaagaccccagccctgttaagctgaacttgggagttggcgcttatcgaactgag 171
||||||||||| | |||||| ||| |||| ||||| ||||| |||||||||||||||
Sbjct: 91 tataacaaagatacaagccctaacaagttgaatttgggtgttggtgcttatcgaactgag 150
Query: 172 gaagggaaacctctggttctgaatgtagtgagaaaagctgagcagcagcttgttaatgac 231
|||||||| ||||| ||| ||||||| ||||| ||||| |||||| || || ||||||
Sbjct: 151 gaagggaagcctctcgttttgaatgtggtgaggaaagcggagcagatactagtaaatgac 210
Query: 232 aggtcacgcgtgaaggaatatcttcccattactgggctcgctgacttcaataaattgagt 291
||| || || || || |||||||| ||| ||| || ||||| || |||||| |||||
Sbjct: 211 cagtctcgggtcaaagagtatcttcctattgttggacttgctgattttaataaactgagt 270
Query: 292 gctaagcttatttttggtgctgacagcaatgctattcaagagaacagggttaccacagtt 351
|| |||||||| || || ||||| ||| ||||| ||||||||||| | || || ||
Sbjct: 271 gccaagcttatcttaggagctgatagccccgctatacaagagaacagaataactactgtg 330
Query: 352 cagtgcttgtctggtactggttctttgagggttggagctgaatttttagccagacattat 411
|| ||||||||||||| ||||||||||| ||||||| || ||| | || || |||||
Sbjct: 331 caaggcttgtctggtaccggttctttgagagttggaggggagtttcttgcaaggcattac 390
Query: 412 caccaacgcatcatatacattccccagccaacttggggaaa 452
|| |||| | ||||||||||| |||||||| ||||||||
Sbjct: 391 catcaactgacaatatacattccacagccaacatggggaaa 431
>gi|268526424|gb|FM895278.1|FM895278 FM895278 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002078,
mRNA sequence
Length = 515
Score = 121 bits (61), Expect = 2e-27
Identities = 271/341 (79%)
Strand = Plus / Plus
Query: 112 tataacaaagaccccagccctgttaagctgaacttgggagttggcgcttatcgaactgag 171
||||||||||| | |||||| ||| |||| ||||| ||||| |||||||||||||||
Sbjct: 115 tataacaaagatacaagccctaacaagttgaatttgggtgttggtgcttatcgaactgag 174
Query: 172 gaagggaaacctctggttctgaatgtagtgagaaaagctgagcagcagcttgttaatgac 231
|||||||| ||||| ||| ||||||| ||||| ||||| |||||| || || ||||||
Sbjct: 175 gaagggaagcctctcgttttgaatgtggtgaggaaagcggagcagatactagtaaatgac 234
Query: 232 aggtcacgcgtgaaggaatatcttcccattactgggctcgctgacttcaataaattgagt 291
||| || || || || |||||||| ||| ||| || ||||| || |||||| |||||
Sbjct: 235 cagtctcgggtcaaagagtatcttcctattgttggacttgctgattttaataaactgagt 294
Query: 292 gctaagcttatttttggtgctgacagcaatgctattcaagagaacagggttaccacagtt 351
|| |||||||| || || ||||| ||| ||||| ||||||||||| | || || ||
Sbjct: 295 gccaagcttatcttaggagctgatagccccgctatacaagagaacagaataactactgtg 354
Query: 352 cagtgcttgtctggtactggttctttgagggttggagctgaatttttagccagacattat 411
|| ||||||||||||| ||||||||||| ||||||| || ||| | || || |||||
Sbjct: 355 caaggcttgtctggtaccggttctttgagagttggaggggagtttcttgcaaggcattac 414
Query: 412 caccaacgcatcatatacattccccagccaacttggggaaa 452
|| |||| | ||||||||||| |||||||| ||||||||
Sbjct: 415 catcaactgacaatatacattccacagccaacatggggaaa 455