Jatropha Genome Database

JcCB0161221.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0161221.20 + phase: 0 
         (369 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523806|gb|FM890492.1|FM890492 FM890492 Jatropha curcas emb...   674   0.0  
gi|268520939|gb|FM891658.1|FM891658 FM891658 Jatropha curcas emb...   496   e-140
gi|268525541|gb|FM890796.1|FM890796 FM890796 Jatropha curcas emb...   184   5e-47

>gi|268523806|gb|FM890492.1|FM890492 FM890492 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000161,
           mRNA sequence
          Length = 355

 Score =  674 bits (340), Expect = 0.0
 Identities = 340/340 (100%)
 Strand = Plus / Plus

                                                                       
Query: 30  cctctctcggccatcaatacttgtgaggccttggacgccatattttctgtacaaccccat 89
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   cctctctcggccatcaatacttgtgaggccttggacgccatattttctgtacaaccccat 64

                                                                       
Query: 90  caagagaaacaagggaagtagcgcggagaaagagaatgaagggcttgcaatagatcagga 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  caagagaaacaagggaagtagcgcggagaaagagaatgaagggcttgcaatagatcagga 124

                                                                       
Query: 150 gagagcttcttcaacagctgatgagttcaaaagagttgcaaaggagaaggaaaaggctga 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gagagcttcttcaacagctgatgagttcaaaagagttgcaaaggagaaggaaaaggctga 184

                                                                       
Query: 210 agaggcaacgcgtgtcgcagaagatcaaggcattactagtcaaactggtgaaaagacaat 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 agaggcaacgcgtgtcgcagaagatcaaggcattactagtcaaactggtgaaaagacaat 244

                                                                       
Query: 270 cgacggcgcagaagaggcttctggagattctaatatcgaatctgttaaaaacaggtataa 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cgacggcgcagaagaggcttctggagattctaatatcgaatctgttaaaaacaggtataa 304

                                                   
Query: 330 gaagcatgaactgggtgctaattctggtagaacaggttga 369
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gaagcatgaactgggtgctaattctggtagaacaggttga 344


>gi|268520939|gb|FM891658.1|FM891658 FM891658 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002010,
           mRNA sequence
          Length = 484

 Score =  496 bits (250), Expect = e-140
 Identities = 260/262 (99%), Gaps = 1/262 (0%)
 Strand = Plus / Minus

                                                                       
Query: 109 agcgcggagaaagagaatgaagggcttgcaatagatcaggagagagcttcttcaacagct 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agcgcggagaaagagaatgaagggcttgcaatagatcaggagagagcttcttcaacagct 425

                                                                       
Query: 169 gatgagttcaaaagagttgcaaaggagaaggaaaa-ggctgaagaggcaacgcgtgtcgc 227
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 424 gatgagttcaaaagagtggcaaaggagaaggaaaaaggctgaagaggcaacgcgtgtcgc 365

                                                                       
Query: 228 agaagatcaaggcattactagtcaaactggtgaaaagacaatcgacggcgcagaagaggc 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agaagatcaaggcattactagtcaaactggtgaaaagacaatcgacggcgcagaagaggc 305

                                                                       
Query: 288 ttctggagattctaatatcgaatctgttaaaaacaggtataagaagcatgaactgggtgc 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttctggagattctaatatcgaatctgttaaaaacaggtataagaagcatgaactgggtgc 245

                                 
Query: 348 taattctggtagaacaggttga 369
           ||||||||||||||||||||||
Sbjct: 244 taattctggtagaacaggttga 223


>gi|268525541|gb|FM890796.1|FM890796 FM890796 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000737,
           mRNA sequence
          Length = 316

 Score =  184 bits (93), Expect = 5e-47
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtggccgttccttccttttctgcaacctctctcggccatcaatacttgtgaggcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  atgagtggccgttccttccttttctgcaacctctctcggccatcaatacttgtgaggcct 108

                                            
Query: 61  tggacgccatattttctgtacaaccccatcaag 93
           |||||||||||||||||||||||||||||||||
Sbjct: 109 tggacgccatattttctgtacaaccccatcaag 141



 Score =  182 bits (92), Expect = 2e-46
 Identities = 95/96 (98%)
 Strand = Plus / Plus

                                                                       
Query: 92  agagaaacaagggaagtagcgcggagaaagagaatgaagggcttgcaatagatcaggaga 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 agagaaacaagggaagtagcgcggagaaagagaatgaagggcttgcaatagatcaggaga 280

                                               
Query: 152 gagcttcttcaacagctgatgagttcaaaagagttg 187
           ||||||||||||||||||||||||||| ||||||||
Sbjct: 281 gagcttcttcaacagctgatgagttcataagagttg 316