Jatropha Genome Database

JcCB0155101.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0155101.10 + phase: 0 /partial/short
         (92 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262090821|gb|GT229179.1|GT229179 JC744 Jatropha seeds from fr...   182   4e-47
gi|268521656|gb|FM896864.1|FM896864 FM896864 Jatropha curcas emb...    62   1e-10

>gi|262090821|gb|GT229179.1|GT229179 JC744 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL18SE.E02.scf 5', mRNA sequence
          Length = 518

 Score =  182 bits (92), Expect = 4e-47
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgatgcaaagaatgctctgtaccaagccactatcaagcaaggagacttcttattaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 cctgatgcaaagaatgctctgtaccaagccactatcaagcaaggagacttcttattaaac 271

                                           
Query: 61  cggatccagaagctatctcgtgtgattgatct 92
           ||||||||||||||||||||||||||||||||
Sbjct: 272 cggatccagaagctatctcgtgtgattgatct 303



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 61  cggatccagaagctatctcgtgtgattgatct 92
           ||||||||||||||||||||||||||||||||
Sbjct: 313 cggatccagaagctatctcgtgtgattgatct 344


>gi|268521656|gb|FM896864.1|FM896864 FM896864 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004274,
           mRNA sequence
          Length = 434

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 1   cctgatgcaaagaatgctctgtaccaagccactat 35
           |||||||| ||||||||||||||||||||||||||
Sbjct: 400 cctgatgccaagaatgctctgtaccaagccactat 434