Jatropha Genome Database

JcCB0154661.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0154661.10 - phase: 0 /partial
         (564 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262091191|gb|GT228618.1|GT228618 JC183 Jatropha seeds from fr...   236   2e-62

>gi|262091191|gb|GT228618.1|GT228618 JC183 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL02SE.C06.scf 5', mRNA sequence
          Length = 558

 Score =  236 bits (119), Expect = 2e-62
 Identities = 308/371 (83%)
 Strand = Plus / Minus

                                                                       
Query: 178 attttcaggctgaagagcaatgcagccaaggctgatgttttccatttgctgtctggcatg 237
           ||||||||||||||| ||| | |||  || ||||||||||||||  |  |||| |  |||
Sbjct: 489 attttcaggctgaagggcactccagggaaagctgatgttttccacatattgtcagatatg 430

                                                                       
Query: 238 tggaagacacctgctgagaggtgtttcttgtggcttggtggcttccgttcatcagagctt 297
            |||||||||| || ||| | |||||| ||||| ||||||||||||| ||||| || || 
Sbjct: 429 cggaagacaccagccgagtgttgtttcatgtggattggtggcttccgctcatccgaactc 370

                                                                       
Query: 298 ctgaagcttcttgtgaatcaattggagcccttgactgagcagcagttggtgggcataggt 357
           ||||||||||||||||||||| |||||||  | |||||||| |||||| |||||||    
Sbjct: 369 ctgaagcttcttgtgaatcaactggagcctctaactgagcaacagttgatgggcatctac 310

                                                                       
Query: 358 aatttgcagcaatcttcccaacaggcagaagatgctttatctcaaggaatggaggcattg 417
           |  ||||| ||||| ||||||||||||||||||||||| || ||||||||||| ||| ||
Sbjct: 309 agcttgcaacaatcatcccaacaggcagaagatgctttgtcacaaggaatggaagcactg 250

                                                                       
Query: 418 cagcagtctctggctgagacattatctagtggatcccttggttcatccggttcatctgga 477
           ||||| || ||||||||||||||  | |||||  ||| |||||| || ||||| ||| | 
Sbjct: 249 cagcaatccctggctgagacattggccagtggcacccctggttcgtcaggttcttctagg 190

                                                                       
Query: 478 aatgtggcaaattacatgggtcagatggccatggccatgggcaagctagggactctcgag 537
           ||||| ||||| || |||||||||||||||||||||||||| |||||||| || || |||
Sbjct: 189 aatgtagcaaactatatgggtcagatggccatggccatgggaaagctaggaacactagag 130

                      
Query: 538 gggttcattcg 548
           |||||| ||||
Sbjct: 129 gggttccttcg 119