Jatropha Genome Database

JcCB0151651.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0151651.10 + phase: 1 /pseudo/partial
         (507 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525637|gb|FM890892.1|FM890892 FM890892 Jatropha curcas emb...   458   e-129
gi|268516979|gb|FM892531.1|FM892531 FM892531 Jatropha curcas emb...   147   1e-35

>gi|268525637|gb|FM890892.1|FM890892 FM890892 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000849,
           mRNA sequence
          Length = 472

 Score =  458 bits (231), Expect = e-129
 Identities = 238/239 (99%), Gaps = 1/239 (0%)
 Strand = Plus / Plus

                                                                       
Query: 269 ctctatgagagataatgcgcaacagctgcagccacctccacctccaaaggagccaacctt 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   ctctatgagagataatgcgcaacagctgcagccacctccacctccaaaggagccaacctt 64

                                                                       
Query: 329 caactgtccaatatgcatgggtccatttgttgaagaaacatcaacaaaatgtgggcacat 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 65  caactgtccaatatgcatgggtccatttgttgaagaaacatcaacaaaatgtgggcaca- 123

                                                                       
Query: 389 ttttctgtaaggcttgcattagggctgcaattggagtacagtcgaaatgtcctacttgta 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ttttctgtaaggcttgcattagggctgcaattggagtacagtcgaaatgtcctacttgta 183

                                                                      
Query: 449 ggaaaaaagtcactgttaaagaacttattagagtgttccttccagcaaccagttgatca 507
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ggaaaaaagtcactgttaaagaacttattagagtgttccttccagcaaccagttgatca 242


>gi|268516979|gb|FM892531.1|FM892531 FM892531 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003109,
           mRNA sequence
          Length = 249

 Score =  147 bits (74), Expect = 1e-35
 Identities = 132/142 (92%), Gaps = 7/142 (4%)
 Strand = Plus / Minus

                                                                       
Query: 366 acatcaacaaaatgtgggcacatttttctgtaaggcttgcattagggctgcaattggagt 425
           |||||||||||||||||||||||| | ||| |||||| |||| |||||||||| || |||
Sbjct: 249 acatcaacaaaatgtgggcacattgt-ctg-aaggct-gcat-agggctgcaagtg-agt 195

                                                                       
Query: 426 acagtcgaaatgtcctacttgtaggaaaaaagtcactgttaaagaacttattagagtgtt 485
           |||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 194 acagtcgaaa-gtcctacttgtaggaaaaa-gtctctgttaaagaacttattagagtgtt 137

                                 
Query: 486 ccttccagcaaccagttgatca 507
           ||||||||||||||||||||||
Sbjct: 136 ccttccagcaaccagttgatca 115