Jatropha Genome Database

JcCB0147231.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0147231.10 + phase: 1 /partial
         (824 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522942|gb|FM896385.1|FM896385 FM896385 Jatropha curcas emb...   624   e-179

>gi|268522942|gb|FM896385.1|FM896385 FM896385 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003594,
           mRNA sequence
          Length = 383

 Score =  624 bits (315), Expect = e-179
 Identities = 352/363 (96%), Gaps = 1/363 (0%)
 Strand = Plus / Plus

                                                                       
Query: 293 gagaacggaggctttgggtatttct-ctggcagcattctccattgcacttcctttctttg 351
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 21  gagaacggaggctttgggtatttctactggcagcattctccattgcacttcctttctttg 80

                                                                       
Query: 352 gacgatttctcaagggtgtaaggccaatggatcaggcagctcttcctggaggtgctgagc 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  gacgatttctcaagggtgtaaggccaatggatcaggcagctcttcctggaggtgctgagc 140

                                                                       
Query: 412 agatttttctgatgtctgagaatatatttgatactcagaaggaggacttggcttgggcaa 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 agatttttctgatgtctgagaatatatttgatactcagaaggaggacttggcttgggcaa 200

                                                                       
Query: 472 cctatgttttattacgaaacacaaacaccatagctgtgttgatatcaattcaaggtggat 531
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 cctatgttctattacgaaacacaaacaccatagctgtgttgatatcaattcaagatggat 260

                                                                       
Query: 532 tatgcgttcgtggatactggaaaacaccagataatttatcaaaggctcaattacttgatt 591
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 261 tatgcgttcgtggatactggaaaacaccagataattaatccaaggctcaattacttgatt 320

                                                                       
Query: 592 ggtttttgaaacagatcgatagcattggtttgtttgacttaagggacaccctctattttc 651
           |||||| |||||| |||||||||||||||||||||||||||  ||||| ||||||||| |
Sbjct: 321 ggttttagaaacaaatcgatagcattggtttgtttgacttactggacaacctctatttac 380

              
Query: 652 cac 654
           |||
Sbjct: 381 cac 383