Jatropha Genome Database

JcCB0143751.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0143751.10 + phase: 2 /pseudo/partial
         (853 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523963|gb|FM890649.1|FM890649 FM890649 Jatropha curcas emb...   468   e-132

>gi|268523963|gb|FM890649.1|FM890649 FM890649 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000556,
           mRNA sequence
          Length = 404

 Score =  468 bits (236), Expect = e-132
 Identities = 350/388 (90%)
 Strand = Plus / Plus

                                                                       
Query: 260 gtggcagagactggatggccttataagggagacaataatgaagtagggccaagtatggag 319
           ||||||||||||||||||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 1   gtggcagagactggatggccttataagggagatgacaatgaagtaggaccaagtattgag 60

                                                                       
Query: 320 aatgctaaggcttacaatggtaacttaattgcacaccttagatcaatggtgggtactcca 379
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61  aatgctaaggcttataatggtaatttaattgcacaccttagatcaatggtgggtactcca 120

                                                                       
Query: 380 ttgatgcctggaaaatcagtagatacatatctttttgctttatatgatgaagacttgaaa 439
           ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 ttgatgcctgggaaatcagtagatacatatctgtttgctttatatgatgaagacttgaaa 180

                                                                       
Query: 440 cccggacctggttcagagcgagcattcggacttttcaagcctgatcttacgatgacttat 499
           || ||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||
Sbjct: 181 cctggacctggttcagagcgagcatttggacttatcaagcctgatcttaccatgatttat 240

                                                                       
Query: 500 gatgttggcctctccaagagtagtcagtcaccttctacaccgaaaactccttcgctaagt 559
           ||| |||| ||||||||||||| |||| | ||| |||| || |||||||||||| | |||
Sbjct: 241 gatattggactctccaagagtaatcaggcgcctactacgccaaaaactccttcggtgagt 300

                                                                       
Query: 560 ccatcgccaaagccaaaacaagcaacatggtgtgtgcccaaggccggtgtctcagatgcc 619
           ||||| | ||  | ||| |||||||||||||||  ||||||||| | |||||||||||||
Sbjct: 301 ccatcacaaactcaaaaccaagcaacatggtgtacgcccaaggctgctgtctcagatgcc 360

                                       
Query: 620 caattgcaggcaaatctagattatgctt 647
            ||| ||| |||||||| ||||||||||
Sbjct: 361 aaatcgcaagcaaatctggattatgctt 388