Jatropha Genome Database

JcCB0143731.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0143731.10 + phase: 0 /pseudo
         (813 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520345|gb|FM890193.1|FM890193 FM890193 Jatropha curcas emb...   254   1e-67

>gi|268520345|gb|FM890193.1|FM890193 FM890193 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004003,
           mRNA sequence
          Length = 602

 Score =  254 bits (128), Expect = 1e-67
 Identities = 140/143 (97%), Gaps = 2/143 (1%)
 Strand = Plus / Minus

                                                                       
Query: 671 agatgaggttaggctctgcctttggagcatttttggatccagttgctgataaagtatgtg 730
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agatgaggttaggctctgcctttggagcatttttggatccagttgctgataaagtatgtg 273

                                                                       
Query: 731 tttcttcttgaacaagattatcagtatatttggttaagcctaattgaattgacttctgtg 790
           ||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||
Sbjct: 272 tttcttcttgaacaagattatcag--tttttggttaagcctaattgaattgacttctgtg 215

                                  
Query: 791 tatggtttatttcaacttataga 813
           |||||||||||||||||||||||
Sbjct: 214 tatggtttatttcaacttataga 192



 Score =  194 bits (98), Expect = 1e-49
 Identities = 98/98 (100%)
 Strand = Plus / Minus

                                                                       
Query: 575 ctttttatctggatagttggtgggggagaacagctacaacaagtattttcattgctgcag 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctttttatctggatagttggtgggggagaacagctacaacaagtattttcattgctgcag 492

                                                 
Query: 635 cagttactgattggcttgatgggtaccttgcccgtaag 672
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagttactgattggcttgatgggtaccttgcccgtaag 454