Jatropha Genome Database

JcCB0143591.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0143591.10 - phase: 0 /partial
         (691 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525055|gb|FM895697.1|FM895697 FM895697 Jatropha curcas emb...   779   0.0  

>gi|268525055|gb|FM895697.1|FM895697 FM895697 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002662,
           mRNA sequence
          Length = 523

 Score =  779 bits (393), Expect = 0.0
 Identities = 420/425 (98%), Gaps = 3/425 (0%)
 Strand = Plus / Plus

                                                                       
Query: 27  aatggagccaaaagaccctaatccaacagcggaggatgaaacccagatcgttgtttctcg 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 aatggagccaaaagaccctaatccaacagcggaggatgaaacccagatcgttgtttctcg 159

                                                                       
Query: 87  gcgcatccagaggttgtcctttcacctcaccccaataccttgctctctctatgattccaa 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gcgcatccagaggttgtcctttcacctcaccccaataccttgctctctctatgattccaa 219

                                                                       
Query: 147 ccagcttggtatggtggagtgcgctaaagcagcgaaattagtggtgaatactgataaact 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ccagcttggtatggtggagtgcgctaaagcagcgaaattagtggtgaatactgataaact 279

                                                                       
Query: 207 gtcgctatacatgagagggaaacatagggagatacaggagaaggtgtttgcttactttaa 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtcgctatacatgagagggaaacatagggagatacaggagaaggtgtttgcttactttaa 339

                                                                       
Query: 267 ttcaaggccggagttgcagaccccagtagagatagctaaagatgactatagggagctttg 326
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 340 ttcaaggccggagttgcagaccccagtaaagatagctaaagatgactatagggagctttg 399

                                                                       
Query: 327 ttggagacagctactgggtttggttagagaggctggaattaggccttttagatatgtagc 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttggagacagctactgggtttggttagagaggctggaattaggccttttagatatgtagc 459

                                                                       
Query: 387 agatgat-cctgttaagtattttgccattcttgaggcggttggtag-cgtggatatgtcg 444
           ||||||| |||||| ||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 460 agatgatccctgtt-agtattttgccattcttgaggcggttggtagccttggatatgtcg 518

                
Query: 445 cttgg 449
           |||||
Sbjct: 519 cttgg 523