Jatropha Genome Database

JcCB0139441.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0139441.10 - phase: 0 /partial
         (726 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522989|gb|FM896432.1|FM896432 FM896432 Jatropha curcas emb...   640   0.0  

>gi|268522989|gb|FM896432.1|FM896432 FM896432 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003649,
           mRNA sequence
          Length = 476

 Score =  640 bits (323), Expect = 0.0
 Identities = 351/362 (96%), Gaps = 1/362 (0%)
 Strand = Plus / Plus

                                                                       
Query: 366 gaactggtggctgcaagtgcatggtcaagaagtaggatattggcctccatcaatattaac 425
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23  gaactagtggctgcaagtgcatggtcaagaagtaggatattggcctccatcaatattaac 82

                                                                       
Query: 426 aagtctagctaatagatcaacattaataaattggggtggattggttgtgaattttcaata 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  aagtctagctaatagatcaacattaataaattggggtggattggttgtgaattttcaata 142

                                                                       
Query: 486 tcatggtcgccatacatctactcaaatgggaagtgggctttttccag-gagaagggttcg 544
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 143 tcatggtcgccatacatctactcaaatgggaagtgggctttttccagagagaagggttcg 202

                                                                       
Query: 545 gaaaagcaagtgcattttggggtcttggatatatagacaatttgggtaaaatgagagatc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaaaagcaagtgcattttggggtcttggatatatagacaatttgggtaaaatgagagatc 262

                                                                       
Query: 605 ctgaacatcttatgccttatgtcacaaagccttcttgctatgacttgaaagttggnnnnn 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 263 ctgaacatcttatgccttatgtcacaaagccttcttgctatgacttgaaagttggaaaaa 322

                                                                       
Query: 665 nnnncaaggattttggagttcacttttattatgggggtcctggattttcaccacgatgcc 724
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaacaaggattttggagttcacttttattatgggggtcctggattttcaccacgatgcc 382

             
Query: 725 tg 726
           ||
Sbjct: 383 tg 384